Hb_000260_430

Information

Type -
Description -
Location Contig260: 270860-271879
Sequence    

Annotation

kegg
ID rcu:RCOM_1323290
description ribosomal protein L17, putative
nr
ID XP_002519977.1
description ribosomal protein L17, putative [Ricinus communis]
swissprot
ID Q9M385
description 50S ribosomal protein L17, chloroplastic OS=Arabidopsis thaliana GN=RPL17 PE=2 SV=1
trembl
ID B9S1V8
description Ribosomal protein L17, putative OS=Ricinus communis GN=RCOM_1323290 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 50s ribosomal protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27000: 270845-271835 , PASA_asmbl_27001: 271415-271525
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_430 0.0 - - ribosomal protein L17, putative [Ricinus communis]
2 Hb_007451_040 0.1123003713 - - PREDICTED: uncharacterized protein LOC105643411 [Jatropha curcas]
3 Hb_011310_140 0.1224420798 - - hypothetical protein JCGZ_07173 [Jatropha curcas]
4 Hb_006787_090 0.1226687773 - - PREDICTED: uncharacterized protein LOC105646282 [Jatropha curcas]
5 Hb_000976_190 0.1284916464 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
6 Hb_000723_350 0.1320951647 - - protein binding protein, putative [Ricinus communis]
7 Hb_000311_120 0.1332519735 - - PREDICTED: NADPH-dependent thioredoxin reductase 3 [Populus euphratica]
8 Hb_172632_060 0.1381378584 - - PREDICTED: uncharacterized protein LOC105646135 isoform X1 [Jatropha curcas]
9 Hb_000574_470 0.1422883919 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
10 Hb_001541_110 0.1426399683 - - PREDICTED: sufE-like protein 2, chloroplastic isoform X2 [Jatropha curcas]
11 Hb_001863_120 0.148031294 - - PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]
12 Hb_000284_130 0.1519655768 - - sodium-bile acid cotransporter, putative [Ricinus communis]
13 Hb_002997_070 0.1553615517 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
14 Hb_004871_010 0.1570705976 - - RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
15 Hb_003752_070 0.1580955715 - - PREDICTED: uncharacterized protein LOC105643912 isoform X1 [Jatropha curcas]
16 Hb_007263_010 0.158165619 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
17 Hb_001930_030 0.1593433922 - - PREDICTED: 30S ribosomal protein S10, chloroplastic [Jatropha curcas]
18 Hb_004586_430 0.1598512185 - - PREDICTED: 29 kDa ribonucleoprotein, chloroplastic [Jatropha curcas]
19 Hb_163950_070 0.1618464747 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
20 Hb_004994_080 0.162559063 - - PREDICTED: cell division protein FtsY homolog, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000260_430 Hb_000260_430 Hb_007451_040 Hb_007451_040 Hb_000260_430--Hb_007451_040 Hb_011310_140 Hb_011310_140 Hb_000260_430--Hb_011310_140 Hb_006787_090 Hb_006787_090 Hb_000260_430--Hb_006787_090 Hb_000976_190 Hb_000976_190 Hb_000260_430--Hb_000976_190 Hb_000723_350 Hb_000723_350 Hb_000260_430--Hb_000723_350 Hb_000311_120 Hb_000311_120 Hb_000260_430--Hb_000311_120 Hb_007263_010 Hb_007263_010 Hb_007451_040--Hb_007263_010 Hb_001541_110 Hb_001541_110 Hb_007451_040--Hb_001541_110 Hb_004994_080 Hb_004994_080 Hb_007451_040--Hb_004994_080 Hb_000140_440 Hb_000140_440 Hb_007451_040--Hb_000140_440 Hb_006555_040 Hb_006555_040 Hb_007451_040--Hb_006555_040 Hb_005162_110 Hb_005162_110 Hb_007451_040--Hb_005162_110 Hb_011310_140--Hb_000976_190 Hb_003304_030 Hb_003304_030 Hb_011310_140--Hb_003304_030 Hb_011310_140--Hb_006787_090 Hb_002997_070 Hb_002997_070 Hb_011310_140--Hb_002997_070 Hb_000194_010 Hb_000194_010 Hb_011310_140--Hb_000194_010 Hb_021650_010 Hb_021650_010 Hb_011310_140--Hb_021650_010 Hb_006787_090--Hb_000311_120 Hb_010174_090 Hb_010174_090 Hb_006787_090--Hb_010174_090 Hb_003752_070 Hb_003752_070 Hb_006787_090--Hb_003752_070 Hb_000284_130 Hb_000284_130 Hb_006787_090--Hb_000284_130 Hb_000613_120 Hb_000613_120 Hb_006787_090--Hb_000613_120 Hb_000144_060 Hb_000144_060 Hb_006787_090--Hb_000144_060 Hb_004871_010 Hb_004871_010 Hb_000976_190--Hb_004871_010 Hb_000976_190--Hb_006787_090 Hb_000976_190--Hb_000194_010 Hb_011861_050 Hb_011861_050 Hb_000976_190--Hb_011861_050 Hb_007426_170 Hb_007426_170 Hb_000976_190--Hb_007426_170 Hb_000723_350--Hb_006787_090 Hb_002915_010 Hb_002915_010 Hb_000723_350--Hb_002915_010 Hb_000723_350--Hb_000284_130 Hb_163950_070 Hb_163950_070 Hb_000723_350--Hb_163950_070 Hb_000723_350--Hb_007451_040 Hb_000311_120--Hb_010174_090 Hb_000580_150 Hb_000580_150 Hb_000311_120--Hb_000580_150 Hb_000555_020 Hb_000555_020 Hb_000311_120--Hb_000555_020 Hb_033312_010 Hb_033312_010 Hb_000311_120--Hb_033312_010 Hb_003529_140 Hb_003529_140 Hb_000311_120--Hb_003529_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
55.6321 24.7524 146.727 23.3606 25.8756 22.6074
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.2387 56.2522 12.0227 12.3207 120.053

CAGE analysis