Hb_080952_050

Information

Type -
Description -
Location Contig80952: 22176-47292
Sequence    

Annotation

kegg
ID fve:101311081
description uncharacterized protein LOC101311081
nr
ID XP_010243933.1
description PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial [Nelumbo nucifera]
swissprot
ID B5X582
description Twinkle homolog protein, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=At1g30680 PE=1 SV=1
trembl
ID A0A067KFE8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09130 PE=4 SV=1
Gene Ontology
ID GO:0003697
description twinkle homolog chloroplastic mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59187: 22192-47120 , PASA_asmbl_59188: 22576-47098
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_080952_050 0.0 - - PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial [Nelumbo nucifera]
2 Hb_009252_040 0.1273234478 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
3 Hb_000731_010 0.1375520986 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Jatropha curcas]
4 Hb_003124_100 0.1436033272 - - -
5 Hb_001832_040 0.1446035999 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004466_050 0.153826946 - - PREDICTED: uncharacterized protein LOC105649250, partial [Jatropha curcas]
7 Hb_002986_070 0.1542889355 - - PREDICTED: uncharacterized membrane protein At3g27390 [Jatropha curcas]
8 Hb_002973_110 0.1552224877 - - ABC transporter family protein [Hevea brasiliensis]
9 Hb_015026_080 0.1585963712 - - -
10 Hb_008092_060 0.1591418758 - - -
11 Hb_000648_040 0.1596621256 - - unknown [Populus trichocarpa]
12 Hb_007313_110 0.1612113718 - - phosphoprotein phosphatase, putative [Ricinus communis]
13 Hb_005250_030 0.1616061251 - - PREDICTED: uncharacterized protein LOC105640177 [Jatropha curcas]
14 Hb_007545_130 0.1619851567 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
15 Hb_000130_320 0.1622713039 desease resistance Gene Name: AAA PREDICTED: uncharacterized protein ycf45 [Jatropha curcas]
16 Hb_025477_050 0.1640339888 - - ABC transporter family protein [Hevea brasiliensis]
17 Hb_000349_240 0.1640723074 - - PREDICTED: probable aminotransferase ACS10 isoform X1 [Jatropha curcas]
18 Hb_000749_090 0.1650551005 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_000599_230 0.1696688171 - - -
20 Hb_013405_080 0.1697715243 - - PREDICTED: proline--tRNA ligase [Jatropha curcas]

Gene co-expression network

sample Hb_080952_050 Hb_080952_050 Hb_009252_040 Hb_009252_040 Hb_080952_050--Hb_009252_040 Hb_000731_010 Hb_000731_010 Hb_080952_050--Hb_000731_010 Hb_003124_100 Hb_003124_100 Hb_080952_050--Hb_003124_100 Hb_001832_040 Hb_001832_040 Hb_080952_050--Hb_001832_040 Hb_004466_050 Hb_004466_050 Hb_080952_050--Hb_004466_050 Hb_002986_070 Hb_002986_070 Hb_080952_050--Hb_002986_070 Hb_009252_040--Hb_000731_010 Hb_000033_110 Hb_000033_110 Hb_009252_040--Hb_000033_110 Hb_000749_090 Hb_000749_090 Hb_009252_040--Hb_000749_090 Hb_018118_010 Hb_018118_010 Hb_009252_040--Hb_018118_010 Hb_013405_080 Hb_013405_080 Hb_009252_040--Hb_013405_080 Hb_000331_560 Hb_000331_560 Hb_009252_040--Hb_000331_560 Hb_000731_010--Hb_000749_090 Hb_004003_040 Hb_004003_040 Hb_000731_010--Hb_004003_040 Hb_000538_280 Hb_000538_280 Hb_000731_010--Hb_000538_280 Hb_000731_010--Hb_000331_560 Hb_135572_010 Hb_135572_010 Hb_000731_010--Hb_135572_010 Hb_000925_090 Hb_000925_090 Hb_003124_100--Hb_000925_090 Hb_003124_100--Hb_009252_040 Hb_143489_010 Hb_143489_010 Hb_003124_100--Hb_143489_010 Hb_000320_470 Hb_000320_470 Hb_003124_100--Hb_000320_470 Hb_002600_060 Hb_002600_060 Hb_003124_100--Hb_002600_060 Hb_003506_050 Hb_003506_050 Hb_003124_100--Hb_003506_050 Hb_015026_080 Hb_015026_080 Hb_001832_040--Hb_015026_080 Hb_000069_490 Hb_000069_490 Hb_001832_040--Hb_000069_490 Hb_000349_240 Hb_000349_240 Hb_001832_040--Hb_000349_240 Hb_002973_110 Hb_002973_110 Hb_001832_040--Hb_002973_110 Hb_001790_080 Hb_001790_080 Hb_001832_040--Hb_001790_080 Hb_143629_140 Hb_143629_140 Hb_001832_040--Hb_143629_140 Hb_001396_240 Hb_001396_240 Hb_004466_050--Hb_001396_240 Hb_052128_010 Hb_052128_010 Hb_004466_050--Hb_052128_010 Hb_001408_030 Hb_001408_030 Hb_004466_050--Hb_001408_030 Hb_008092_060 Hb_008092_060 Hb_004466_050--Hb_008092_060 Hb_015531_030 Hb_015531_030 Hb_004466_050--Hb_015531_030 Hb_164926_010 Hb_164926_010 Hb_004466_050--Hb_164926_010 Hb_002016_050 Hb_002016_050 Hb_002986_070--Hb_002016_050 Hb_007545_130 Hb_007545_130 Hb_002986_070--Hb_007545_130 Hb_015778_060 Hb_015778_060 Hb_002986_070--Hb_015778_060 Hb_005523_010 Hb_005523_010 Hb_002986_070--Hb_005523_010 Hb_000186_080 Hb_000186_080 Hb_002986_070--Hb_000186_080 Hb_013459_010 Hb_013459_010 Hb_002986_070--Hb_013459_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.29467 6.10474 5.30329 3.57034 2.019 9.88689
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.38948 2.44708 1.01333 5.78666 17.2257

CAGE analysis