Hb_000094_340

Information

Type -
Description -
Location Contig94: 269901-278431
Sequence    

Annotation

kegg
ID pmum:103343662
description uncharacterized LOC103343662
nr
ID XP_008245529.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103343662 [Prunus mume]
swissprot
ID P11369
description LINE-1 retrotransposable element ORF2 protein OS=Mus musculus GN=Pol PE=1 SV=2
trembl
ID J7G2Z7
description Non-ltr retroelement reverse transcriptase OS=Rosa rugosa PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63129: 273591-274098
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000094_340 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103343662 [Prunus mume]
2 Hb_001196_040 0.207654701 - - PREDICTED: uncharacterized protein LOC104100193 [Nicotiana tomentosiformis]
3 Hb_001799_110 0.2175651101 - - PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X2 [Jatropha curcas]
4 Hb_075265_010 0.2186547328 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
5 Hb_005709_010 0.224555539 - - DNA (cytosine-5)-methyltransferase, putative [Ricinus communis]
6 Hb_002194_050 0.2300491339 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Jatropha curcas]
7 Hb_000796_240 0.2304692513 - - -
8 Hb_001511_150 0.2351278611 - - monovalent cation:proton antiporter, putative [Ricinus communis]
9 Hb_002092_120 0.2360059344 - - PREDICTED: peptidyl-tRNA hydrolase, chloroplastic [Jatropha curcas]
10 Hb_122273_010 0.2362315348 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_186725_010 0.2441150101 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
12 Hb_000731_230 0.246019517 - - PREDICTED: abnormal spindle-like microcephaly-associated protein homolog [Jatropha curcas]
13 Hb_000002_240 0.2478062766 - - PREDICTED: transcription factor bHLH104 [Jatropha curcas]
14 Hb_000475_040 0.2484164797 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
15 Hb_001671_040 0.2489962433 - - PREDICTED: serine/arginine-rich splicing factor RS31-like isoform X1 [Populus euphratica]
16 Hb_006210_020 0.2493351778 - - PREDICTED: calcium sensing receptor, chloroplastic [Jatropha curcas]
17 Hb_003147_060 0.2505730123 - - syntaxin, plant, putative [Ricinus communis]
18 Hb_001728_020 0.2507472854 - - PREDICTED: trans-1,2-dihydrobenzene-1,2-diol dehydrogenase [Jatropha curcas]
19 Hb_012725_120 0.2509371635 - - PREDICTED: stress enhanced protein 2, chloroplastic [Jatropha curcas]
20 Hb_004225_060 0.2515422211 - - hypothetical protein CISIN_1g027511mg [Citrus sinensis]

Gene co-expression network

sample Hb_000094_340 Hb_000094_340 Hb_001196_040 Hb_001196_040 Hb_000094_340--Hb_001196_040 Hb_001799_110 Hb_001799_110 Hb_000094_340--Hb_001799_110 Hb_075265_010 Hb_075265_010 Hb_000094_340--Hb_075265_010 Hb_005709_010 Hb_005709_010 Hb_000094_340--Hb_005709_010 Hb_002194_050 Hb_002194_050 Hb_000094_340--Hb_002194_050 Hb_000796_240 Hb_000796_240 Hb_000094_340--Hb_000796_240 Hb_000345_260 Hb_000345_260 Hb_001196_040--Hb_000345_260 Hb_000086_320 Hb_000086_320 Hb_001196_040--Hb_000086_320 Hb_000731_230 Hb_000731_230 Hb_001196_040--Hb_000731_230 Hb_000186_300 Hb_000186_300 Hb_001196_040--Hb_000186_300 Hb_000568_060 Hb_000568_060 Hb_001196_040--Hb_000568_060 Hb_003362_080 Hb_003362_080 Hb_001799_110--Hb_003362_080 Hb_000959_310 Hb_000959_310 Hb_001799_110--Hb_000959_310 Hb_001799_110--Hb_075265_010 Hb_009976_010 Hb_009976_010 Hb_001799_110--Hb_009976_010 Hb_001449_010 Hb_001449_010 Hb_001799_110--Hb_001449_010 Hb_158144_010 Hb_158144_010 Hb_001799_110--Hb_158144_010 Hb_011909_120 Hb_011909_120 Hb_075265_010--Hb_011909_120 Hb_048898_010 Hb_048898_010 Hb_075265_010--Hb_048898_010 Hb_001322_040 Hb_001322_040 Hb_075265_010--Hb_001322_040 Hb_003206_120 Hb_003206_120 Hb_075265_010--Hb_003206_120 Hb_062226_140 Hb_062226_140 Hb_075265_010--Hb_062226_140 Hb_186725_010 Hb_186725_010 Hb_005709_010--Hb_186725_010 Hb_005539_340 Hb_005539_340 Hb_005709_010--Hb_005539_340 Hb_005709_010--Hb_000796_240 Hb_000526_030 Hb_000526_030 Hb_005709_010--Hb_000526_030 Hb_037063_010 Hb_037063_010 Hb_005709_010--Hb_037063_010 Hb_031403_020 Hb_031403_020 Hb_005709_010--Hb_031403_020 Hb_008375_030 Hb_008375_030 Hb_002194_050--Hb_008375_030 Hb_009771_060 Hb_009771_060 Hb_002194_050--Hb_009771_060 Hb_004129_090 Hb_004129_090 Hb_002194_050--Hb_004129_090 Hb_001776_210 Hb_001776_210 Hb_002194_050--Hb_001776_210 Hb_004994_080 Hb_004994_080 Hb_002194_050--Hb_004994_080 Hb_002876_300 Hb_002876_300 Hb_002194_050--Hb_002876_300 Hb_000008_420 Hb_000008_420 Hb_000796_240--Hb_000008_420 Hb_012539_110 Hb_012539_110 Hb_000796_240--Hb_012539_110 Hb_000088_270 Hb_000088_270 Hb_000796_240--Hb_000088_270 Hb_089140_040 Hb_089140_040 Hb_000796_240--Hb_089140_040 Hb_007423_050 Hb_007423_050 Hb_000796_240--Hb_007423_050 Hb_006588_060 Hb_006588_060 Hb_000796_240--Hb_006588_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0201398 0.0303287 0.0307758 0.0116931 0 0.01189
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.015194 0.0298945 0 0.0141911 0.0128621

CAGE analysis