Hb_000186_300

Information

Type -
Description -
Location Contig186: 354924-361629
Sequence    

Annotation

kegg
ID rcu:RCOM_0903560
description malonyl-CoA decarboxylase, putative (EC:4.1.1.9)
nr
ID XP_012091299.1
description PREDICTED: malonyl-CoA decarboxylase, mitochondrial [Jatropha curcas]
swissprot
ID O95822
description Malonyl-CoA decarboxylase, mitochondrial OS=Homo sapiens GN=MLYCD PE=1 SV=3
trembl
ID B9RXF9
description Malonyl-CoA decarboxylase, putative OS=Ricinus communis GN=RCOM_0903560 PE=4 SV=1
Gene Ontology
ID GO:0005777
description malonyl- mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18252: 355052-355997 , PASA_asmbl_18253: 358770-361665 , PASA_asmbl_18254: 357207-358143 , PASA_asmbl_18255: 357481-360265
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000186_300 0.0 - - PREDICTED: malonyl-CoA decarboxylase, mitochondrial [Jatropha curcas]
2 Hb_009476_130 0.0845000415 - - hypothetical protein VITISV_005430 [Vitis vinifera]
3 Hb_000003_680 0.0987337726 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]
4 Hb_003506_030 0.1038542143 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X2 [Jatropha curcas]
5 Hb_001623_490 0.1049755216 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
6 Hb_000291_180 0.1052714806 - - PREDICTED: meiotically up-regulated gene 185 protein [Jatropha curcas]
7 Hb_004531_150 0.1060990544 - - PREDICTED: peroxisome biogenesis protein 2 isoform X1 [Jatropha curcas]
8 Hb_000155_170 0.1096227378 transcription factor TF Family: VOZ hypothetical protein EUTSA_v10007498mg [Eutrema salsugineum]
9 Hb_001776_210 0.1129129497 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
10 Hb_003540_050 0.1130060638 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X4 [Jatropha curcas]
11 Hb_016448_010 0.1130405587 - - Protein MYG1, putative [Ricinus communis]
12 Hb_027905_020 0.1154738453 - - PREDICTED: uncharacterized protein LOC105642268 [Jatropha curcas]
13 Hb_002218_020 0.1160833996 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
14 Hb_000656_300 0.1166254941 - - PREDICTED: aldehyde dehydrogenase family 7 member B4-like [Populus euphratica]
15 Hb_029584_040 0.1171692879 - - hypothetical protein Csa_1G586790 [Cucumis sativus]
16 Hb_003687_080 0.1182064396 - - PREDICTED: casein kinase I-like [Jatropha curcas]
17 Hb_026234_010 0.1182612205 - - choline monooxygenase, putative [Ricinus communis]
18 Hb_000663_020 0.1182753648 - - PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
19 Hb_001053_190 0.1183627696 - - ADP,ATP carrier protein, putative [Ricinus communis]
20 Hb_000318_220 0.1184436734 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000186_300 Hb_000186_300 Hb_009476_130 Hb_009476_130 Hb_000186_300--Hb_009476_130 Hb_000003_680 Hb_000003_680 Hb_000186_300--Hb_000003_680 Hb_003506_030 Hb_003506_030 Hb_000186_300--Hb_003506_030 Hb_001623_490 Hb_001623_490 Hb_000186_300--Hb_001623_490 Hb_000291_180 Hb_000291_180 Hb_000186_300--Hb_000291_180 Hb_004531_150 Hb_004531_150 Hb_000186_300--Hb_004531_150 Hb_000163_260 Hb_000163_260 Hb_009476_130--Hb_000163_260 Hb_113853_010 Hb_113853_010 Hb_009476_130--Hb_113853_010 Hb_012438_030 Hb_012438_030 Hb_009476_130--Hb_012438_030 Hb_001504_010 Hb_001504_010 Hb_009476_130--Hb_001504_010 Hb_000155_170 Hb_000155_170 Hb_009476_130--Hb_000155_170 Hb_012286_020 Hb_012286_020 Hb_000003_680--Hb_012286_020 Hb_000787_080 Hb_000787_080 Hb_000003_680--Hb_000787_080 Hb_087313_010 Hb_087313_010 Hb_000003_680--Hb_087313_010 Hb_021576_150 Hb_021576_150 Hb_000003_680--Hb_021576_150 Hb_002218_020 Hb_002218_020 Hb_000003_680--Hb_002218_020 Hb_102948_010 Hb_102948_010 Hb_000003_680--Hb_102948_010 Hb_016448_010 Hb_016448_010 Hb_003506_030--Hb_016448_010 Hb_000089_210 Hb_000089_210 Hb_003506_030--Hb_000089_210 Hb_029695_080 Hb_029695_080 Hb_003506_030--Hb_029695_080 Hb_003506_030--Hb_087313_010 Hb_003506_030--Hb_004531_150 Hb_000958_080 Hb_000958_080 Hb_003506_030--Hb_000958_080 Hb_012779_080 Hb_012779_080 Hb_001623_490--Hb_012779_080 Hb_000327_330 Hb_000327_330 Hb_001623_490--Hb_000327_330 Hb_005665_090 Hb_005665_090 Hb_001623_490--Hb_005665_090 Hb_002026_090 Hb_002026_090 Hb_001623_490--Hb_002026_090 Hb_001623_490--Hb_002218_020 Hb_001623_490--Hb_016448_010 Hb_160271_010 Hb_160271_010 Hb_000291_180--Hb_160271_010 Hb_001882_010 Hb_001882_010 Hb_000291_180--Hb_001882_010 Hb_048093_010 Hb_048093_010 Hb_000291_180--Hb_048093_010 Hb_000108_020 Hb_000108_020 Hb_000291_180--Hb_000108_020 Hb_000680_010 Hb_000680_010 Hb_000291_180--Hb_000680_010 Hb_068079_010 Hb_068079_010 Hb_000291_180--Hb_068079_010 Hb_004531_150--Hb_001504_010 Hb_005305_100 Hb_005305_100 Hb_004531_150--Hb_005305_100 Hb_006261_050 Hb_006261_050 Hb_004531_150--Hb_006261_050 Hb_001541_150 Hb_001541_150 Hb_004531_150--Hb_001541_150 Hb_021596_020 Hb_021596_020 Hb_004531_150--Hb_021596_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.09814 5.82684 12.3034 9.06226 2.53732 3.73903
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.66061 3.22636 1.13691 3.06499 6.70796

CAGE analysis