Hb_001322_040

Information

Type -
Description -
Location Contig1322: 62002-65555
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09259: 64960-65293
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001322_040 0.0 - - -
2 Hb_001215_040 0.100376021 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005365_030 0.1006183501 - - hypothetical protein POPTR_0002s24010g [Populus trichocarpa]
4 Hb_008226_060 0.1119875504 - - PREDICTED: folic acid synthesis protein fol1-like [Jatropha curcas]
5 Hb_001057_040 0.115447938 - - PREDICTED: oligosaccharyltransferase complex subunit ostc [Jatropha curcas]
6 Hb_003389_040 0.1173283419 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
7 Hb_001133_120 0.1186784577 - - PREDICTED: uncharacterized protein LOC105629988 [Jatropha curcas]
8 Hb_000175_540 0.1192521718 - - PREDICTED: uncharacterized protein LOC105634886 [Jatropha curcas]
9 Hb_000327_230 0.1206902755 - - PREDICTED: nitrilase-like protein 2 isoform X1 [Jatropha curcas]
10 Hb_001221_100 0.1207453053 - - PREDICTED: elongation factor 1-delta 1-like [Citrus sinensis]
11 Hb_000792_130 0.1214033221 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
12 Hb_005489_060 0.122653077 - - Anamorsin, putative [Ricinus communis]
13 Hb_124953_020 0.1237527351 - - Mitochondrial import inner membrane translocase subunit Tim13, putative [Ricinus communis]
14 Hb_008173_110 0.1242674105 - - DNA binding protein, putative [Ricinus communis]
15 Hb_000783_010 0.1278659005 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
16 Hb_000136_260 0.1282286574 - - 40S ribosomal protein S5A [Hevea brasiliensis]
17 Hb_024958_010 0.1288204421 - - PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105 [Jatropha curcas]
18 Hb_010423_030 0.1292881697 - - PREDICTED: uncharacterized protein LOC105645584 [Jatropha curcas]
19 Hb_001123_060 0.1311952484 - - PREDICTED: ALBINO3-like protein 2, chloroplastic [Jatropha curcas]
20 Hb_000610_050 0.1313400434 - - skp1, putative [Ricinus communis]

Gene co-expression network

sample Hb_001322_040 Hb_001322_040 Hb_001215_040 Hb_001215_040 Hb_001322_040--Hb_001215_040 Hb_005365_030 Hb_005365_030 Hb_001322_040--Hb_005365_030 Hb_008226_060 Hb_008226_060 Hb_001322_040--Hb_008226_060 Hb_001057_040 Hb_001057_040 Hb_001322_040--Hb_001057_040 Hb_003389_040 Hb_003389_040 Hb_001322_040--Hb_003389_040 Hb_001133_120 Hb_001133_120 Hb_001322_040--Hb_001133_120 Hb_000312_080 Hb_000312_080 Hb_001215_040--Hb_000312_080 Hb_000175_540 Hb_000175_540 Hb_001215_040--Hb_000175_540 Hb_000023_280 Hb_000023_280 Hb_001215_040--Hb_000023_280 Hb_011344_120 Hb_011344_120 Hb_001215_040--Hb_011344_120 Hb_001653_020 Hb_001653_020 Hb_001215_040--Hb_001653_020 Hb_001215_040--Hb_005365_030 Hb_124953_020 Hb_124953_020 Hb_005365_030--Hb_124953_020 Hb_029388_020 Hb_029388_020 Hb_005365_030--Hb_029388_020 Hb_002078_140 Hb_002078_140 Hb_005365_030--Hb_002078_140 Hb_002320_040 Hb_002320_040 Hb_005365_030--Hb_002320_040 Hb_001691_140 Hb_001691_140 Hb_005365_030--Hb_001691_140 Hb_027472_040 Hb_027472_040 Hb_005365_030--Hb_027472_040 Hb_008226_060--Hb_003389_040 Hb_007101_300 Hb_007101_300 Hb_008226_060--Hb_007101_300 Hb_000032_380 Hb_000032_380 Hb_008226_060--Hb_000032_380 Hb_002205_110 Hb_002205_110 Hb_008226_060--Hb_002205_110 Hb_010997_080 Hb_010997_080 Hb_008226_060--Hb_010997_080 Hb_000417_040 Hb_000417_040 Hb_008226_060--Hb_000417_040 Hb_000701_100 Hb_000701_100 Hb_001057_040--Hb_000701_100 Hb_009051_030 Hb_009051_030 Hb_001057_040--Hb_009051_030 Hb_009615_070 Hb_009615_070 Hb_001057_040--Hb_009615_070 Hb_018124_010 Hb_018124_010 Hb_001057_040--Hb_018124_010 Hb_008695_050 Hb_008695_050 Hb_001057_040--Hb_008695_050 Hb_000406_080 Hb_000406_080 Hb_001057_040--Hb_000406_080 Hb_003389_040--Hb_007101_300 Hb_003389_040--Hb_000032_380 Hb_003389_040--Hb_000417_040 Hb_000357_110 Hb_000357_110 Hb_003389_040--Hb_000357_110 Hb_156635_010 Hb_156635_010 Hb_003389_040--Hb_156635_010 Hb_000039_220 Hb_000039_220 Hb_001133_120--Hb_000039_220 Hb_000215_110 Hb_000215_110 Hb_001133_120--Hb_000215_110 Hb_000152_500 Hb_000152_500 Hb_001133_120--Hb_000152_500 Hb_000667_070 Hb_000667_070 Hb_001133_120--Hb_000667_070 Hb_001599_040 Hb_001599_040 Hb_001133_120--Hb_001599_040 Hb_002303_070 Hb_002303_070 Hb_001133_120--Hb_002303_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.1079 3.30451 2.57849 3.97747 1.01549 4.19983
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.80233 6.66482 2.26261 3.94133 1.14994

CAGE analysis