Hb_001133_120

Information

Type -
Description -
Location Contig1133: 188443-192651
Sequence    

Annotation

kegg
ID rcu:RCOM_1663450
description nucleic acid binding protein, putative
nr
ID XP_012067044.1
description PREDICTED: uncharacterized protein LOC105629988 [Jatropha curcas]
swissprot
ID Q6JB11
description Protein MATERNALLY EXPRESSED GENE 5 OS=Zea mays GN=MEG5 PE=2 SV=1
trembl
ID A0A067L118
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03023 PE=4 SV=1
Gene Ontology
ID GO:0000166
description nucleic acid binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03980: 188179-192599 , PASA_asmbl_03981: 188835-189320 , PASA_asmbl_03982: 188654-192532
cDNA
(Sanger)
(ID:Location)		 020_O16.ab1: 188753-192599

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001133_120 0.0 - - PREDICTED: uncharacterized protein LOC105629988 [Jatropha curcas]
2 Hb_000039_220 0.0602628309 - - PREDICTED: vesicle-associated protein 4-2-like [Gossypium raimondii]
3 Hb_000215_110 0.064980251 - - PREDICTED: uncharacterized protein C3F10.06c isoform X1 [Jatropha curcas]
4 Hb_000152_500 0.0654968221 - - PREDICTED: probable mitochondrial intermediate peptidase, mitochondrial [Jatropha curcas]
5 Hb_000667_070 0.0713796643 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
6 Hb_001599_040 0.0747673471 - - PREDICTED: suppressor protein SRP40 isoform X2 [Jatropha curcas]
7 Hb_002303_070 0.0752015566 - - PREDICTED: uncharacterized RNA-binding protein C1827.05c [Jatropha curcas]
8 Hb_000768_090 0.0752021816 - - PREDICTED: UTP--glucose-1-phosphate uridylyltransferase isoform X1 [Jatropha curcas]
9 Hb_000373_070 0.0769021617 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
10 Hb_024958_010 0.0779275339 - - PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105 [Jatropha curcas]
11 Hb_058999_020 0.0798148404 - - PREDICTED: mitochondrial outer membrane import complex protein METAXIN [Jatropha curcas]
12 Hb_000317_240 0.0807106578 - - PREDICTED: protein DYAD [Jatropha curcas]
13 Hb_000403_050 0.0807210616 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
14 Hb_000684_380 0.0807704483 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
15 Hb_000334_280 0.0816665684 - - PREDICTED: protein FRA10AC1 [Jatropha curcas]
16 Hb_003125_120 0.0825398684 - - PREDICTED: TITAN-like protein [Jatropha curcas]
17 Hb_008554_060 0.0837154289 - - PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Jatropha curcas]
18 Hb_001470_030 0.0859254072 - - PREDICTED: MORC family CW-type zinc finger protein 3 isoform X2 [Jatropha curcas]
19 Hb_001163_050 0.085937915 - - PREDICTED: histone deacetylase 9 [Jatropha curcas]
20 Hb_001142_030 0.0860945419 - - PREDICTED: uncharacterized protein LOC105640023 [Jatropha curcas]

Gene co-expression network

sample Hb_001133_120 Hb_001133_120 Hb_000039_220 Hb_000039_220 Hb_001133_120--Hb_000039_220 Hb_000215_110 Hb_000215_110 Hb_001133_120--Hb_000215_110 Hb_000152_500 Hb_000152_500 Hb_001133_120--Hb_000152_500 Hb_000667_070 Hb_000667_070 Hb_001133_120--Hb_000667_070 Hb_001599_040 Hb_001599_040 Hb_001133_120--Hb_001599_040 Hb_002303_070 Hb_002303_070 Hb_001133_120--Hb_002303_070 Hb_000768_090 Hb_000768_090 Hb_000039_220--Hb_000768_090 Hb_000039_220--Hb_002303_070 Hb_000317_240 Hb_000317_240 Hb_000039_220--Hb_000317_240 Hb_002197_020 Hb_002197_020 Hb_000039_220--Hb_002197_020 Hb_001357_350 Hb_001357_350 Hb_000039_220--Hb_001357_350 Hb_000215_110--Hb_002303_070 Hb_000373_070 Hb_000373_070 Hb_000215_110--Hb_000373_070 Hb_003226_140 Hb_003226_140 Hb_000215_110--Hb_003226_140 Hb_001279_150 Hb_001279_150 Hb_000215_110--Hb_001279_150 Hb_000331_260 Hb_000331_260 Hb_000215_110--Hb_000331_260 Hb_000580_180 Hb_000580_180 Hb_000215_110--Hb_000580_180 Hb_003151_040 Hb_003151_040 Hb_000152_500--Hb_003151_040 Hb_000152_500--Hb_000373_070 Hb_001470_030 Hb_001470_030 Hb_000152_500--Hb_001470_030 Hb_006059_050 Hb_006059_050 Hb_000152_500--Hb_006059_050 Hb_027380_050 Hb_027380_050 Hb_000152_500--Hb_027380_050 Hb_001245_100 Hb_001245_100 Hb_000667_070--Hb_001245_100 Hb_001123_130 Hb_001123_130 Hb_000667_070--Hb_001123_130 Hb_000656_240 Hb_000656_240 Hb_000667_070--Hb_000656_240 Hb_015279_010 Hb_015279_010 Hb_000667_070--Hb_015279_010 Hb_008554_060 Hb_008554_060 Hb_000667_070--Hb_008554_060 Hb_001599_040--Hb_002303_070 Hb_001946_400 Hb_001946_400 Hb_001599_040--Hb_001946_400 Hb_006831_140 Hb_006831_140 Hb_001599_040--Hb_006831_140 Hb_005730_120 Hb_005730_120 Hb_001599_040--Hb_005730_120 Hb_000640_170 Hb_000640_170 Hb_001599_040--Hb_000640_170 Hb_007390_010 Hb_007390_010 Hb_001599_040--Hb_007390_010 Hb_002303_070--Hb_003226_140 Hb_002303_070--Hb_005730_120 Hb_005357_080 Hb_005357_080 Hb_002303_070--Hb_005357_080 Hb_005271_220 Hb_005271_220 Hb_002303_070--Hb_005271_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.6096 24.5099 33.9982 25.1485 19.4941 40.3274
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.1899 53.3553 28.2844 33.6704 20.2458

CAGE analysis