Hb_008375_030

Information

Type -
Description -
Location Contig8375: 48262-51495
Sequence    

Annotation

kegg
ID rcu:RCOM_0866780
description RNA exonuclease NGL1, putative (EC:3.1.13.4)
nr
ID XP_011027988.1
description PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X1 [Populus euphratica]
swissprot
ID A8MS41
description Carbon catabolite repressor protein 4 homolog 4 OS=Arabidopsis thaliana GN=CCR4-4 PE=2 SV=1
trembl
ID B9S1N8
description RNA exonuclease NGL1, putative OS=Ricinus communis GN=RCOM_0866780 PE=4 SV=1
Gene Ontology
ID GO:0004535
description carbon catabolite repressor protein 4 homolog 4 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60013: 8620-49762
cDNA
(Sanger)
(ID:Location)		 050_I23.ab1: 8620-49762

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008375_030 0.0 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X1 [Populus euphratica]
2 Hb_001623_490 0.0887927409 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
3 Hb_002194_050 0.0956382843 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Jatropha curcas]
4 Hb_005665_090 0.0970855701 - - PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X2 [Jatropha curcas]
5 Hb_002218_020 0.0992555403 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
6 Hb_012779_080 0.1016356873 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
7 Hb_012438_030 0.1043466377 - - PREDICTED: protein sym-1 [Jatropha curcas]
8 Hb_009476_130 0.1045013388 - - hypothetical protein VITISV_005430 [Vitis vinifera]
9 Hb_023091_010 0.1047353556 - - hypothetical protein POPTR_0016s06670g [Populus trichocarpa]
10 Hb_001430_020 0.1048216487 - - Actin-like ATPase superfamily protein isoform 1 [Theobroma cacao]
11 Hb_000212_250 0.1051569773 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004994_080 0.1060721324 - - PREDICTED: cell division protein FtsY homolog, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_011476_030 0.1070196169 - - PREDICTED: uncharacterized protein LOC105632352 [Jatropha curcas]
14 Hb_006588_190 0.1071148778 - - PREDICTED: ataxin-3 homolog [Jatropha curcas]
15 Hb_000181_060 0.108023302 - - PREDICTED: 30S ribosomal protein S20, chloroplastic [Jatropha curcas]
16 Hb_000029_400 0.1088087058 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 isoform X1 [Jatropha curcas]
17 Hb_001009_140 0.1089390038 - - hypothetical protein JCGZ_11337 [Jatropha curcas]
18 Hb_002876_300 0.1106979624 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
19 Hb_000163_260 0.1130237772 - - PREDICTED: uncharacterized protein LOC105642518 [Jatropha curcas]
20 Hb_102948_010 0.1142997628 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_008375_030 Hb_008375_030 Hb_001623_490 Hb_001623_490 Hb_008375_030--Hb_001623_490 Hb_002194_050 Hb_002194_050 Hb_008375_030--Hb_002194_050 Hb_005665_090 Hb_005665_090 Hb_008375_030--Hb_005665_090 Hb_002218_020 Hb_002218_020 Hb_008375_030--Hb_002218_020 Hb_012779_080 Hb_012779_080 Hb_008375_030--Hb_012779_080 Hb_012438_030 Hb_012438_030 Hb_008375_030--Hb_012438_030 Hb_001623_490--Hb_012779_080 Hb_000327_330 Hb_000327_330 Hb_001623_490--Hb_000327_330 Hb_001623_490--Hb_005665_090 Hb_002026_090 Hb_002026_090 Hb_001623_490--Hb_002026_090 Hb_001623_490--Hb_002218_020 Hb_016448_010 Hb_016448_010 Hb_001623_490--Hb_016448_010 Hb_009771_060 Hb_009771_060 Hb_002194_050--Hb_009771_060 Hb_004129_090 Hb_004129_090 Hb_002194_050--Hb_004129_090 Hb_001776_210 Hb_001776_210 Hb_002194_050--Hb_001776_210 Hb_004994_080 Hb_004994_080 Hb_002194_050--Hb_004994_080 Hb_002876_300 Hb_002876_300 Hb_002194_050--Hb_002876_300 Hb_005665_090--Hb_012779_080 Hb_009288_040 Hb_009288_040 Hb_005665_090--Hb_009288_040 Hb_000320_190 Hb_000320_190 Hb_005665_090--Hb_000320_190 Hb_000645_180 Hb_000645_180 Hb_005665_090--Hb_000645_180 Hb_010620_050 Hb_010620_050 Hb_005665_090--Hb_010620_050 Hb_102948_010 Hb_102948_010 Hb_002218_020--Hb_102948_010 Hb_001430_020 Hb_001430_020 Hb_002218_020--Hb_001430_020 Hb_002218_020--Hb_012438_030 Hb_087313_010 Hb_087313_010 Hb_002218_020--Hb_087313_010 Hb_000663_020 Hb_000663_020 Hb_002218_020--Hb_000663_020 Hb_003883_010 Hb_003883_010 Hb_002218_020--Hb_003883_010 Hb_012779_080--Hb_000320_190 Hb_002915_010 Hb_002915_010 Hb_012779_080--Hb_002915_010 Hb_012779_080--Hb_010620_050 Hb_012779_080--Hb_009288_040 Hb_012438_030--Hb_087313_010 Hb_001703_040 Hb_001703_040 Hb_012438_030--Hb_001703_040 Hb_000163_260 Hb_000163_260 Hb_012438_030--Hb_000163_260 Hb_012438_030--Hb_002876_300 Hb_012438_030--Hb_102948_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.24492 2.0084 6.06086 2.147 0.738718 1.27432
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.6709 1.5314 0.553345 1.59498 3.66229

CAGE analysis