Hb_122273_010

Information

Type -
Description -
Location Contig122273: 1463-6947
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_122273_010 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_000094_340 0.2362315348 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103343662 [Prunus mume]
3 Hb_002701_110 0.2428602491 transcription factor TF Family: MIKC PREDICTED: developmental protein SEPALLATA 1-like [Jatropha curcas]
4 Hb_112046_010 0.248515981 - - PREDICTED: uncharacterized protein LOC105772042 [Gossypium raimondii]
5 Hb_001196_040 0.2531621704 - - PREDICTED: uncharacterized protein LOC104100193 [Nicotiana tomentosiformis]
6 Hb_016567_010 0.2584119854 - - -
7 Hb_001277_230 0.2659745533 - - -
8 Hb_010578_030 0.2660088739 - - PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Jatropha curcas]
9 Hb_000181_090 0.2705217116 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
10 Hb_000260_430 0.2723006966 - - ribosomal protein L17, putative [Ricinus communis]
11 Hb_001410_070 0.2749476006 - - hypothetical protein JCGZ_20421 [Jatropha curcas]
12 Hb_002194_050 0.275242543 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Jatropha curcas]
13 Hb_002997_070 0.2807289651 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
14 Hb_027472_100 0.2820901014 - - PREDICTED: uncharacterized protein LOC105646173 [Jatropha curcas]
15 Hb_001541_050 0.2822211834 - - PREDICTED: serine/threonine-protein kinase AFC2-like [Jatropha curcas]
16 Hb_012506_070 0.2825854826 - - hypothetical protein POPTR_0004s20060g [Populus trichocarpa]
17 Hb_000796_160 0.2830940757 - - PREDICTED: nifU-like protein 1, chloroplastic [Jatropha curcas]
18 Hb_000300_670 0.2831706676 - - PREDICTED: uncharacterized protein LOC105632624 isoform X1 [Jatropha curcas]
19 Hb_001401_080 0.2845770848 - - PREDICTED: protein TIC 22, chloroplastic [Jatropha curcas]
20 Hb_001369_610 0.2853248824 - - PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_122273_010 Hb_122273_010 Hb_000094_340 Hb_000094_340 Hb_122273_010--Hb_000094_340 Hb_002701_110 Hb_002701_110 Hb_122273_010--Hb_002701_110 Hb_112046_010 Hb_112046_010 Hb_122273_010--Hb_112046_010 Hb_001196_040 Hb_001196_040 Hb_122273_010--Hb_001196_040 Hb_016567_010 Hb_016567_010 Hb_122273_010--Hb_016567_010 Hb_001277_230 Hb_001277_230 Hb_122273_010--Hb_001277_230 Hb_000094_340--Hb_001196_040 Hb_001799_110 Hb_001799_110 Hb_000094_340--Hb_001799_110 Hb_075265_010 Hb_075265_010 Hb_000094_340--Hb_075265_010 Hb_005709_010 Hb_005709_010 Hb_000094_340--Hb_005709_010 Hb_002194_050 Hb_002194_050 Hb_000094_340--Hb_002194_050 Hb_000796_240 Hb_000796_240 Hb_000094_340--Hb_000796_240 Hb_002997_070 Hb_002997_070 Hb_002701_110--Hb_002997_070 Hb_010578_030 Hb_010578_030 Hb_002701_110--Hb_010578_030 Hb_004680_080 Hb_004680_080 Hb_002701_110--Hb_004680_080 Hb_007313_110 Hb_007313_110 Hb_002701_110--Hb_007313_110 Hb_000723_350 Hb_000723_350 Hb_002701_110--Hb_000723_350 Hb_000162_120 Hb_000162_120 Hb_112046_010--Hb_000162_120 Hb_001490_030 Hb_001490_030 Hb_112046_010--Hb_001490_030 Hb_000627_260 Hb_000627_260 Hb_112046_010--Hb_000627_260 Hb_112046_010--Hb_016567_010 Hb_030131_010 Hb_030131_010 Hb_112046_010--Hb_030131_010 Hb_000345_260 Hb_000345_260 Hb_001196_040--Hb_000345_260 Hb_000086_320 Hb_000086_320 Hb_001196_040--Hb_000086_320 Hb_000731_230 Hb_000731_230 Hb_001196_040--Hb_000731_230 Hb_000186_300 Hb_000186_300 Hb_001196_040--Hb_000186_300 Hb_000568_060 Hb_000568_060 Hb_001196_040--Hb_000568_060 Hb_003497_040 Hb_003497_040 Hb_016567_010--Hb_003497_040 Hb_001056_030 Hb_001056_030 Hb_016567_010--Hb_001056_030 Hb_001401_080 Hb_001401_080 Hb_016567_010--Hb_001401_080 Hb_000008_360 Hb_000008_360 Hb_016567_010--Hb_000008_360 Hb_000105_050 Hb_000105_050 Hb_016567_010--Hb_000105_050 Hb_029866_120 Hb_029866_120 Hb_016567_010--Hb_029866_120 Hb_002248_030 Hb_002248_030 Hb_001277_230--Hb_002248_030 Hb_000032_060 Hb_000032_060 Hb_001277_230--Hb_000032_060 Hb_005928_040 Hb_005928_040 Hb_001277_230--Hb_005928_040 Hb_027472_140 Hb_027472_140 Hb_001277_230--Hb_027472_140 Hb_177132_010 Hb_177132_010 Hb_001277_230--Hb_177132_010 Hb_158560_010 Hb_158560_010 Hb_001277_230--Hb_158560_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0289199 0.0161674 0.0269414 0.00655506 0 0.0160878
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0202437 0.0238969 0 0.00315413 0.0341689

CAGE analysis