Hb_030131_010

Information

Type -
Description -
Location Contig30131: 2025-5059
Sequence    

Annotation

kegg
ID rcu:RCOM_1600940
description AMP dependent ligase, putative (EC:6.2.1.26)
nr
ID XP_012073663.1
description PREDICTED: probable acyl-activating enzyme 1, peroxisomal, partial [Jatropha curcas]
swissprot
ID F4HUK6
description Probable acyl-activating enzyme 1, peroxisomal OS=Arabidopsis thaliana GN=AAE1 PE=2 SV=1
trembl
ID B9R8M5
description AMP dependent ligase, putative OS=Ricinus communis GN=RCOM_1600940 PE=4 SV=1
Gene Ontology
ID GO:0008756
description probable acyl-activating enzyme peroxisomal

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31725: 2047-3599
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030131_010 0.0 - - PREDICTED: probable acyl-activating enzyme 1, peroxisomal, partial [Jatropha curcas]
2 Hb_006452_230 0.2024110929 - - PREDICTED: uncharacterized protein LOC105635044 [Jatropha curcas]
3 Hb_000331_520 0.23754026 - - Esterase precursor, putative [Ricinus communis]
4 Hb_000175_260 0.2380163497 - - PREDICTED: glucan endo-1,3-beta-glucosidase 14-like [Populus euphratica]
5 Hb_009710_030 0.2533871267 - - -
6 Hb_000254_140 0.2554236835 - - PREDICTED: 30S ribosomal protein S17, chloroplastic [Jatropha curcas]
7 Hb_000258_140 0.2567567774 - - conserved hypothetical protein [Ricinus communis]
8 Hb_183086_050 0.2595286231 - - PREDICTED: metal-nicotianamine transporter YSL3 [Jatropha curcas]
9 Hb_000294_050 0.2598008378 - - PREDICTED: uncharacterized protein LOC105638579 [Jatropha curcas]
10 Hb_001435_020 0.2604236667 - - hypothetical protein JCGZ_22466 [Jatropha curcas]
11 Hb_007632_170 0.2667921394 - - hypothetical protein JCGZ_01028 [Jatropha curcas]
12 Hb_161207_010 0.2689540753 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
13 Hb_097218_020 0.2690915245 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit E [Jatropha curcas]
14 Hb_003687_250 0.2728043259 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 1-like [Jatropha curcas]
15 Hb_112046_010 0.2764263446 - - PREDICTED: uncharacterized protein LOC105772042 [Gossypium raimondii]
16 Hb_001790_030 0.2825139592 - - PREDICTED: ferredoxin-thioredoxin reductase catalytic chain, chloroplastic [Jatropha curcas]
17 Hb_019040_030 0.2852546009 - - PREDICTED: probable ribosome-binding factor A, chloroplastic [Jatropha curcas]
18 Hb_005725_260 0.2856368129 - - squalene monooxygenase [Jatropha curcas]
19 Hb_000438_140 0.2860728736 - - hypothetical protein CISIN_1g018088mg [Citrus sinensis]
20 Hb_000191_080 0.2875485994 - - PREDICTED: uncharacterized protein LOC105637945 [Jatropha curcas]

Gene co-expression network

sample Hb_030131_010 Hb_030131_010 Hb_006452_230 Hb_006452_230 Hb_030131_010--Hb_006452_230 Hb_000331_520 Hb_000331_520 Hb_030131_010--Hb_000331_520 Hb_000175_260 Hb_000175_260 Hb_030131_010--Hb_000175_260 Hb_009710_030 Hb_009710_030 Hb_030131_010--Hb_009710_030 Hb_000254_140 Hb_000254_140 Hb_030131_010--Hb_000254_140 Hb_000258_140 Hb_000258_140 Hb_030131_010--Hb_000258_140 Hb_007157_010 Hb_007157_010 Hb_006452_230--Hb_007157_010 Hb_006452_230--Hb_000331_520 Hb_000402_100 Hb_000402_100 Hb_006452_230--Hb_000402_100 Hb_172665_010 Hb_172665_010 Hb_006452_230--Hb_172665_010 Hb_001366_070 Hb_001366_070 Hb_006452_230--Hb_001366_070 Hb_000331_520--Hb_172665_010 Hb_000331_520--Hb_007157_010 Hb_161207_010 Hb_161207_010 Hb_000331_520--Hb_161207_010 Hb_011724_030 Hb_011724_030 Hb_000331_520--Hb_011724_030 Hb_001195_070 Hb_001195_070 Hb_000175_260--Hb_001195_070 Hb_029920_060 Hb_029920_060 Hb_000175_260--Hb_029920_060 Hb_000175_260--Hb_000254_140 Hb_000345_080 Hb_000345_080 Hb_000175_260--Hb_000345_080 Hb_000294_050 Hb_000294_050 Hb_000175_260--Hb_000294_050 Hb_000742_030 Hb_000742_030 Hb_000175_260--Hb_000742_030 Hb_009615_180 Hb_009615_180 Hb_009710_030--Hb_009615_180 Hb_011364_020 Hb_011364_020 Hb_009710_030--Hb_011364_020 Hb_003226_190 Hb_003226_190 Hb_009710_030--Hb_003226_190 Hb_002783_150 Hb_002783_150 Hb_009710_030--Hb_002783_150 Hb_030959_010 Hb_030959_010 Hb_009710_030--Hb_030959_010 Hb_001546_010 Hb_001546_010 Hb_009710_030--Hb_001546_010 Hb_004109_160 Hb_004109_160 Hb_000254_140--Hb_004109_160 Hb_001790_030 Hb_001790_030 Hb_000254_140--Hb_001790_030 Hb_000984_240 Hb_000984_240 Hb_000254_140--Hb_000984_240 Hb_000723_290 Hb_000723_290 Hb_000254_140--Hb_000723_290 Hb_007632_170 Hb_007632_170 Hb_000254_140--Hb_007632_170 Hb_020378_060 Hb_020378_060 Hb_000254_140--Hb_020378_060 Hb_000661_070 Hb_000661_070 Hb_000258_140--Hb_000661_070 Hb_000347_330 Hb_000347_330 Hb_000258_140--Hb_000347_330 Hb_000212_290 Hb_000212_290 Hb_000258_140--Hb_000212_290 Hb_009680_020 Hb_009680_020 Hb_000258_140--Hb_009680_020 Hb_007973_010 Hb_007973_010 Hb_000258_140--Hb_007973_010 Hb_019040_030 Hb_019040_030 Hb_000258_140--Hb_019040_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0366073 0.0313093 0.0160358 0.110172 0 0.0184111
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.143446 0.112865 0 0.0299504 0.198458

CAGE analysis