Hb_000661_070

Information

Type -
Description -
Location Contig661: 60210-63376
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52952: 60111-60262
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000661_070 0.0 - - -
2 Hb_000258_140 0.1513696645 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001221_340 0.1878750148 - - hypothetical protein EUGRSUZ_B00102 [Eucalyptus grandis]
4 Hb_007973_010 0.1891918917 - - PREDICTED: uncharacterized protein LOC105631404 isoform X2 [Jatropha curcas]
5 Hb_001452_210 0.1892867379 - - molybdopterin biosynthesis CNX1 protein [Arabidopsis thaliana]
6 Hb_005048_040 0.194448236 - - PREDICTED: endonuclease 1 [Jatropha curcas]
7 Hb_004897_010 0.2044477623 - - -
8 Hb_003747_060 0.2072046721 - - PREDICTED: CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 2 isoform X2 [Cucumis sativus]
9 Hb_007943_200 0.2091547616 - - Uncharacterized protein isoform 2 [Theobroma cacao]
10 Hb_000510_240 0.2111355136 desease resistance Gene Name: PRK ATP binding protein, putative [Ricinus communis]
11 Hb_000227_070 0.211704564 - - PREDICTED: ATP-dependent (S)-NAD(P)H-hydrate dehydratase isoform X2 [Jatropha curcas]
12 Hb_002200_050 0.2140682705 - - unknown [Lotus japonicus]
13 Hb_000661_080 0.2142466924 - - monoxygenase, putative [Ricinus communis]
14 Hb_006153_030 0.215031566 - - PREDICTED: probable transaldolase [Jatropha curcas]
15 Hb_001387_020 0.2174452217 - - PREDICTED: uncharacterized protein LOC102587892 [Solanum tuberosum]
16 Hb_005694_020 0.2184384569 - - PREDICTED: ORM1-like protein 2 [Gossypium raimondii]
17 Hb_010815_020 0.2189786318 - - unnamed protein product [Vitis vinifera]
18 Hb_000160_160 0.2215994378 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Jatropha curcas]
19 Hb_011794_080 0.2217322181 - - acyl-CoA thioesterase, putative [Ricinus communis]
20 Hb_002126_010 0.2218312967 - - predicted protein [Hordeum vulgare subsp. vulgare]

Gene co-expression network

sample Hb_000661_070 Hb_000661_070 Hb_000258_140 Hb_000258_140 Hb_000661_070--Hb_000258_140 Hb_001221_340 Hb_001221_340 Hb_000661_070--Hb_001221_340 Hb_007973_010 Hb_007973_010 Hb_000661_070--Hb_007973_010 Hb_001452_210 Hb_001452_210 Hb_000661_070--Hb_001452_210 Hb_005048_040 Hb_005048_040 Hb_000661_070--Hb_005048_040 Hb_004897_010 Hb_004897_010 Hb_000661_070--Hb_004897_010 Hb_000347_330 Hb_000347_330 Hb_000258_140--Hb_000347_330 Hb_000212_290 Hb_000212_290 Hb_000258_140--Hb_000212_290 Hb_009680_020 Hb_009680_020 Hb_000258_140--Hb_009680_020 Hb_000258_140--Hb_007973_010 Hb_019040_030 Hb_019040_030 Hb_000258_140--Hb_019040_030 Hb_001221_340--Hb_001452_210 Hb_001221_340--Hb_007973_010 Hb_002131_030 Hb_002131_030 Hb_001221_340--Hb_002131_030 Hb_002908_060 Hb_002908_060 Hb_001221_340--Hb_002908_060 Hb_000053_060 Hb_000053_060 Hb_001221_340--Hb_000053_060 Hb_001953_080 Hb_001953_080 Hb_001221_340--Hb_001953_080 Hb_052764_110 Hb_052764_110 Hb_007973_010--Hb_052764_110 Hb_004317_060 Hb_004317_060 Hb_007973_010--Hb_004317_060 Hb_008447_040 Hb_008447_040 Hb_007973_010--Hb_008447_040 Hb_004785_080 Hb_004785_080 Hb_007973_010--Hb_004785_080 Hb_000270_390 Hb_000270_390 Hb_007973_010--Hb_000270_390 Hb_001452_210--Hb_052764_110 Hb_098315_080 Hb_098315_080 Hb_001452_210--Hb_098315_080 Hb_000227_070 Hb_000227_070 Hb_001452_210--Hb_000227_070 Hb_179924_010 Hb_179924_010 Hb_001452_210--Hb_179924_010 Hb_003098_080 Hb_003098_080 Hb_001452_210--Hb_003098_080 Hb_000080_210 Hb_000080_210 Hb_005048_040--Hb_000080_210 Hb_099136_010 Hb_099136_010 Hb_005048_040--Hb_099136_010 Hb_008318_010 Hb_008318_010 Hb_005048_040--Hb_008318_010 Hb_001242_140 Hb_001242_140 Hb_005048_040--Hb_001242_140 Hb_000927_020 Hb_000927_020 Hb_005048_040--Hb_000927_020 Hb_010815_020 Hb_010815_020 Hb_004897_010--Hb_010815_020 Hb_000286_200 Hb_000286_200 Hb_004897_010--Hb_000286_200 Hb_000649_140 Hb_000649_140 Hb_004897_010--Hb_000649_140 Hb_000031_260 Hb_000031_260 Hb_004897_010--Hb_000031_260 Hb_000286_060 Hb_000286_060 Hb_004897_010--Hb_000286_060 Hb_004897_010--Hb_001953_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0251185 0.0839463 0.0188547 0.276423 0.02521 0.347869
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.461116 0.362628 0.0828312 0.38383 0.368009

CAGE analysis