Hb_005048_040

Information

Type -
Description -
Location Contig5048: 25741-28779
Sequence    

Annotation

kegg
ID pop:POPTR_0011s04430g
description POPTRDRAFT_771158; endonuclease family protein
nr
ID XP_012091525.1
description PREDICTED: endonuclease 1 [Jatropha curcas]
swissprot
ID Q9SXA6
description Endonuclease 1 OS=Arabidopsis thaliana GN=ENDO1 PE=1 SV=1
trembl
ID A0A067JN05
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21375 PE=4 SV=1
Gene Ontology
ID GO:0003676
description endonuclease 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45971: 27530-27977
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005048_040 0.0 - - PREDICTED: endonuclease 1 [Jatropha curcas]
2 Hb_000661_070 0.194448236 - - -
3 Hb_000080_210 0.2148258921 - - PREDICTED: uncharacterized protein LOC105628422 [Jatropha curcas]
4 Hb_099136_010 0.216595882 - - PREDICTED: cysteine synthase-like isoform X3 [Cucumis sativus]
5 Hb_008318_010 0.2396113549 - - PREDICTED: WD repeat-containing protein 82-B isoform X1 [Jatropha curcas]
6 Hb_001242_140 0.2402532139 - - mitochondrial carrier protein, putative [Ricinus communis]
7 Hb_000927_020 0.2409723796 - - synaptosomal associated protein, putative [Ricinus communis]
8 Hb_005701_060 0.2419330763 - - hypothetical protein JCGZ_04513 [Jatropha curcas]
9 Hb_004421_020 0.2425849429 - - -
10 Hb_000563_190 0.2438525417 - - hypothetical protein PRUPE_ppa002828mg [Prunus persica]
11 Hb_006153_030 0.2449954575 - - PREDICTED: probable transaldolase [Jatropha curcas]
12 Hb_000230_240 0.2494199049 - - tRNA/rRNA methyltransferase family protein [Populus trichocarpa]
13 Hb_004709_020 0.2495337444 - - PREDICTED: putative threonine aspartase [Jatropha curcas]
14 Hb_001136_010 0.2503371402 - - hypothetical protein JCGZ_18294 [Jatropha curcas]
15 Hb_006277_110 0.2509334012 - - protein with unknown function [Ricinus communis]
16 Hb_000258_140 0.2513498921 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003747_060 0.2519595302 - - PREDICTED: CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 2 isoform X2 [Cucumis sativus]
18 Hb_021596_080 0.2524659348 - - 50S ribosomal protein L33A [Hevea brasiliensis]
19 Hb_001799_200 0.2527513279 - - PREDICTED: tRNA wybutosine-synthesizing protein 4 [Jatropha curcas]
20 Hb_011794_080 0.2540041791 - - acyl-CoA thioesterase, putative [Ricinus communis]

Gene co-expression network

sample Hb_005048_040 Hb_005048_040 Hb_000661_070 Hb_000661_070 Hb_005048_040--Hb_000661_070 Hb_000080_210 Hb_000080_210 Hb_005048_040--Hb_000080_210 Hb_099136_010 Hb_099136_010 Hb_005048_040--Hb_099136_010 Hb_008318_010 Hb_008318_010 Hb_005048_040--Hb_008318_010 Hb_001242_140 Hb_001242_140 Hb_005048_040--Hb_001242_140 Hb_000927_020 Hb_000927_020 Hb_005048_040--Hb_000927_020 Hb_000258_140 Hb_000258_140 Hb_000661_070--Hb_000258_140 Hb_001221_340 Hb_001221_340 Hb_000661_070--Hb_001221_340 Hb_007973_010 Hb_007973_010 Hb_000661_070--Hb_007973_010 Hb_001452_210 Hb_001452_210 Hb_000661_070--Hb_001452_210 Hb_004897_010 Hb_004897_010 Hb_000661_070--Hb_004897_010 Hb_005092_060 Hb_005092_060 Hb_000080_210--Hb_005092_060 Hb_009113_050 Hb_009113_050 Hb_000080_210--Hb_009113_050 Hb_006907_130 Hb_006907_130 Hb_000080_210--Hb_006907_130 Hb_012794_010 Hb_012794_010 Hb_000080_210--Hb_012794_010 Hb_006277_110 Hb_006277_110 Hb_000080_210--Hb_006277_110 Hb_002662_030 Hb_002662_030 Hb_000080_210--Hb_002662_030 Hb_000159_130 Hb_000159_130 Hb_099136_010--Hb_000159_130 Hb_008103_050 Hb_008103_050 Hb_099136_010--Hb_008103_050 Hb_055619_010 Hb_055619_010 Hb_099136_010--Hb_055619_010 Hb_001799_200 Hb_001799_200 Hb_099136_010--Hb_001799_200 Hb_099136_010--Hb_001242_140 Hb_007534_050 Hb_007534_050 Hb_099136_010--Hb_007534_050 Hb_003683_080 Hb_003683_080 Hb_008318_010--Hb_003683_080 Hb_001950_120 Hb_001950_120 Hb_008318_010--Hb_001950_120 Hb_000317_410 Hb_000317_410 Hb_008318_010--Hb_000317_410 Hb_021056_020 Hb_021056_020 Hb_008318_010--Hb_021056_020 Hb_000010_260 Hb_000010_260 Hb_008318_010--Hb_000010_260 Hb_008695_040 Hb_008695_040 Hb_008318_010--Hb_008695_040 Hb_005307_050 Hb_005307_050 Hb_001242_140--Hb_005307_050 Hb_002613_020 Hb_002613_020 Hb_001242_140--Hb_002613_020 Hb_001019_150 Hb_001019_150 Hb_001242_140--Hb_001019_150 Hb_003106_100 Hb_003106_100 Hb_001242_140--Hb_003106_100 Hb_016734_070 Hb_016734_070 Hb_001242_140--Hb_016734_070 Hb_186982_040 Hb_186982_040 Hb_001242_140--Hb_186982_040 Hb_028420_020 Hb_028420_020 Hb_000927_020--Hb_028420_020 Hb_005016_050 Hb_005016_050 Hb_000927_020--Hb_005016_050 Hb_000567_030 Hb_000567_030 Hb_000927_020--Hb_000567_030 Hb_005862_010 Hb_005862_010 Hb_000927_020--Hb_005862_010 Hb_000795_060 Hb_000795_060 Hb_000927_020--Hb_000795_060 Hb_001454_260 Hb_001454_260 Hb_000927_020--Hb_001454_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.596255 0.545054 2.37097 4.11068 0.0192686 6.93896
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.0552 4.81021 1.29895 6.44893 3.42047

CAGE analysis