Hb_000795_060

Information

Type rubber biosynthesis
Description Gene Name: Acetyl-CoA acetyltransferase
Location Contig795: 232717-242483
Sequence    

Annotation

kegg
ID rcu:RCOM_0860740
description acetyl-CoA acetyltransferase, mitochondrial, putative (EC:2.3.1.9)
nr
ID AFJ74323.1
description acetyl-CoA C-acetyltransferase [Hevea brasiliensis]
swissprot
ID Q9FIK7
description Probable acetyl-CoA acetyltransferase, cytosolic 2 OS=Arabidopsis thaliana GN=At5g47720 PE=2 SV=1
trembl
ID A0A067KHA9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08950 PE=3 SV=1
Gene Ontology
ID GO:0005737
description acetoacetyl- thiolase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58501: 241915-243814
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000795_060 0.0 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase acetyl-CoA C-acetyltransferase [Hevea brasiliensis]
2 Hb_001454_260 0.0935255554 - - hypothetical protein RCOM_0681280 [Ricinus communis]
3 Hb_000003_080 0.0991133615 - - PREDICTED: SART-1 family protein DOT2 isoform X1 [Jatropha curcas]
4 Hb_001842_100 0.1043062657 rubber biosynthesis Gene Name: Dimethyallyltransferase hypothetical protein JCGZ_10905 [Jatropha curcas]
5 Hb_010423_040 0.1089591905 - - hypothetical protein JCGZ_17463 [Jatropha curcas]
6 Hb_000272_020 0.1125660044 - - oxidoreductase, putative [Ricinus communis]
7 Hb_001421_060 0.113574976 - - PREDICTED: tobamovirus multiplication protein 2B isoform X2 [Jatropha curcas]
8 Hb_001006_190 0.1153545737 - - PREDICTED: uncharacterized protein LOC105634201 [Jatropha curcas]
9 Hb_000116_440 0.1156097645 - - PREDICTED: eukaryotic translation initiation factor 6-2 [Jatropha curcas]
10 Hb_000599_300 0.1159297849 - - PREDICTED: TBC1 domain family member 15-like [Jatropha curcas]
11 Hb_001579_270 0.1167623544 - - PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X1 [Jatropha curcas]
12 Hb_020581_010 0.1213160679 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_008695_040 0.1220141083 - - PREDICTED: small ribosomal subunit protein S13, mitochondrial-like [Jatropha curcas]
14 Hb_000086_380 0.1234730507 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
15 Hb_000329_140 0.1255702656 - - PREDICTED: methionine aminopeptidase 1A isoform X1 [Jatropha curcas]
16 Hb_000342_100 0.12583585 - - PREDICTED: PITH domain-containing protein 1 [Jatropha curcas]
17 Hb_003581_100 0.1260858057 - - PREDICTED: protein TWIN LOV 1 isoform X1 [Jatropha curcas]
18 Hb_002596_040 0.1266366237 - - PREDICTED: uncharacterized protein LOC105645264 isoform X2 [Jatropha curcas]
19 Hb_002893_080 0.1268190557 - - PREDICTED: V-type proton ATPase subunit c''1 [Jatropha curcas]
20 Hb_002893_050 0.1271597529 - - hypothetical protein POPTR_0006s26510g [Populus trichocarpa]

Gene co-expression network

sample Hb_000795_060 Hb_000795_060 Hb_001454_260 Hb_001454_260 Hb_000795_060--Hb_001454_260 Hb_000003_080 Hb_000003_080 Hb_000795_060--Hb_000003_080 Hb_001842_100 Hb_001842_100 Hb_000795_060--Hb_001842_100 Hb_010423_040 Hb_010423_040 Hb_000795_060--Hb_010423_040 Hb_000272_020 Hb_000272_020 Hb_000795_060--Hb_000272_020 Hb_001421_060 Hb_001421_060 Hb_000795_060--Hb_001421_060 Hb_003581_100 Hb_003581_100 Hb_001454_260--Hb_003581_100 Hb_033153_090 Hb_033153_090 Hb_001454_260--Hb_033153_090 Hb_001454_260--Hb_001421_060 Hb_011781_030 Hb_011781_030 Hb_001454_260--Hb_011781_030 Hb_005400_030 Hb_005400_030 Hb_001454_260--Hb_005400_030 Hb_000116_440 Hb_000116_440 Hb_000003_080--Hb_000116_440 Hb_000342_100 Hb_000342_100 Hb_000003_080--Hb_000342_100 Hb_020581_010 Hb_020581_010 Hb_000003_080--Hb_020581_010 Hb_000003_080--Hb_000272_020 Hb_000220_220 Hb_000220_220 Hb_000003_080--Hb_000220_220 Hb_000003_080--Hb_001842_100 Hb_005291_030 Hb_005291_030 Hb_001842_100--Hb_005291_030 Hb_001287_080 Hb_001287_080 Hb_001842_100--Hb_001287_080 Hb_002271_020 Hb_002271_020 Hb_001842_100--Hb_002271_020 Hb_001221_100 Hb_001221_100 Hb_001842_100--Hb_001221_100 Hb_002893_050 Hb_002893_050 Hb_001842_100--Hb_002893_050 Hb_000086_380 Hb_000086_380 Hb_001842_100--Hb_000086_380 Hb_008406_190 Hb_008406_190 Hb_010423_040--Hb_008406_190 Hb_003333_060 Hb_003333_060 Hb_010423_040--Hb_003333_060 Hb_002296_040 Hb_002296_040 Hb_010423_040--Hb_002296_040 Hb_005615_080 Hb_005615_080 Hb_010423_040--Hb_005615_080 Hb_000103_090 Hb_000103_090 Hb_010423_040--Hb_000103_090 Hb_000103_080 Hb_000103_080 Hb_010423_040--Hb_000103_080 Hb_002253_100 Hb_002253_100 Hb_000272_020--Hb_002253_100 Hb_001579_270 Hb_001579_270 Hb_000272_020--Hb_001579_270 Hb_000329_140 Hb_000329_140 Hb_000272_020--Hb_000329_140 Hb_000272_020--Hb_000103_080 Hb_000272_020--Hb_020581_010 Hb_003599_040 Hb_003599_040 Hb_001421_060--Hb_003599_040 Hb_000373_120 Hb_000373_120 Hb_001421_060--Hb_000373_120 Hb_001016_030 Hb_001016_030 Hb_001421_060--Hb_001016_030 Hb_001421_060--Hb_000103_090 Hb_006816_530 Hb_006816_530 Hb_001421_060--Hb_006816_530 Hb_015807_040 Hb_015807_040 Hb_001421_060--Hb_015807_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.04016 0.539336 0.462324 0.866186 0.505441 1.44041
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.93773 1.69355 0.502751 1.05934 1.04846

CAGE analysis