Hb_021056_020

Information

Type -
Description -
Location Contig21056: 7533-11569
Sequence    

Annotation

kegg
ID pop:POPTR_0006s00770g
description POPTRDRAFT_801678; ATPase 6 family protein
nr
ID AKG55563.1
description plasma membrane H+-ATPase [Hevea brasiliensis]
swissprot
ID Q9M2A0
description ATPase 8, plasma membrane-type OS=Arabidopsis thaliana GN=AHA8 PE=3 SV=1
trembl
ID B9HAQ1
description ATPase 6 family protein OS=Populus trichocarpa GN=POPTR_0006s20290g PE=3 SV=1
Gene Ontology
ID GO:0016021
description atpase plasma membrane-type

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21782: 9752-10186 , PASA_asmbl_21783: 10579-11142
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021056_020 0.0 - - plasma membrane H+-ATPase [Hevea brasiliensis]
2 Hb_008695_040 0.1023839929 - - PREDICTED: small ribosomal subunit protein S13, mitochondrial-like [Jatropha curcas]
3 Hb_002609_210 0.1122730621 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
4 Hb_009711_020 0.1144316368 - - PREDICTED: uncharacterized protein LOC105647794 isoform X2 [Jatropha curcas]
5 Hb_000446_030 0.1167837642 - - amino acid binding protein, putative [Ricinus communis]
6 Hb_000030_290 0.1184523295 - - PREDICTED: uncharacterized protein LOC100247068 [Vitis vinifera]
7 Hb_001824_010 0.122793152 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
8 Hb_002477_140 0.12832383 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-3 isoform X1 [Jatropha curcas]
9 Hb_008699_020 0.1290762703 - - eukaryotic translation initiation factor 5A isoform IV [Hevea brasiliensis]
10 Hb_000840_190 0.1295810239 - - 60S ribosomal protein L10, mitochondrial, putative [Ricinus communis]
11 Hb_000221_150 0.1336090622 - - -
12 Hb_002805_220 0.1339393977 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
13 Hb_001427_110 0.1343543189 - - PREDICTED: LOW QUALITY PROTEIN: yrdC domain-containing protein, mitochondrial [Jatropha curcas]
14 Hb_000506_120 0.1363789959 - - hypothetical protein AALP_AA6G154200 [Arabis alpina]
15 Hb_076693_030 0.1364079235 - - PREDICTED: serine/arginine-rich-splicing factor SR34-like [Populus euphratica]
16 Hb_000567_030 0.1403789616 - - hypothetical protein JCGZ_21550 [Jatropha curcas]
17 Hb_001616_040 0.1407699165 - - PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]
18 Hb_002081_070 0.1408179988 - - PREDICTED: pyridoxal kinase [Jatropha curcas]
19 Hb_005245_080 0.1420070686 - - PREDICTED: uncharacterized protein LOC105643645 isoform X2 [Jatropha curcas]
20 Hb_005736_060 0.1426387878 - - PREDICTED: ribosome maturation protein SBDS [Jatropha curcas]

Gene co-expression network

sample Hb_021056_020 Hb_021056_020 Hb_008695_040 Hb_008695_040 Hb_021056_020--Hb_008695_040 Hb_002609_210 Hb_002609_210 Hb_021056_020--Hb_002609_210 Hb_009711_020 Hb_009711_020 Hb_021056_020--Hb_009711_020 Hb_000446_030 Hb_000446_030 Hb_021056_020--Hb_000446_030 Hb_000030_290 Hb_000030_290 Hb_021056_020--Hb_000030_290 Hb_001824_010 Hb_001824_010 Hb_021056_020--Hb_001824_010 Hb_000840_190 Hb_000840_190 Hb_008695_040--Hb_000840_190 Hb_008695_040--Hb_001824_010 Hb_001421_060 Hb_001421_060 Hb_008695_040--Hb_001421_060 Hb_002596_040 Hb_002596_040 Hb_008695_040--Hb_002596_040 Hb_076693_030 Hb_076693_030 Hb_008695_040--Hb_076693_030 Hb_002805_220 Hb_002805_220 Hb_008695_040--Hb_002805_220 Hb_002609_210--Hb_009711_020 Hb_005211_190 Hb_005211_190 Hb_002609_210--Hb_005211_190 Hb_002609_210--Hb_000030_290 Hb_009421_040 Hb_009421_040 Hb_002609_210--Hb_009421_040 Hb_000680_140 Hb_000680_140 Hb_002609_210--Hb_000680_140 Hb_000334_210 Hb_000334_210 Hb_002609_210--Hb_000334_210 Hb_009711_020--Hb_000030_290 Hb_001616_040 Hb_001616_040 Hb_009711_020--Hb_001616_040 Hb_009711_020--Hb_000334_210 Hb_002477_140 Hb_002477_140 Hb_009711_020--Hb_002477_140 Hb_004871_020 Hb_004871_020 Hb_009711_020--Hb_004871_020 Hb_000025_120 Hb_000025_120 Hb_000446_030--Hb_000025_120 Hb_000987_120 Hb_000987_120 Hb_000446_030--Hb_000987_120 Hb_001722_100 Hb_001722_100 Hb_000446_030--Hb_001722_100 Hb_000696_340 Hb_000696_340 Hb_000446_030--Hb_000696_340 Hb_174865_030 Hb_174865_030 Hb_000446_030--Hb_174865_030 Hb_000221_150 Hb_000221_150 Hb_000446_030--Hb_000221_150 Hb_000030_290--Hb_001616_040 Hb_153544_010 Hb_153544_010 Hb_000030_290--Hb_153544_010 Hb_000030_290--Hb_000334_210 Hb_000331_470 Hb_000331_470 Hb_000030_290--Hb_000331_470 Hb_001824_010--Hb_001421_060 Hb_001824_010--Hb_076693_030 Hb_001824_010--Hb_002596_040 Hb_001824_010--Hb_000840_190 Hb_008699_020 Hb_008699_020 Hb_001824_010--Hb_008699_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.144538 0.141498 0.188674 0.147406 0.156282 0.317436
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.88957 0.567254 0.2076 0.301675 0.102902

CAGE analysis