Hb_016734_070

Information

Type -
Description -
Location Contig16734: 51035-54121
Sequence    

Annotation

kegg
ID csv:101220293
description uncharacterized LOC101220293
nr
ID CBX25341.1
description hypothetical_protein [Oryza brachyantha]
swissprot
ID -
description -
trembl
ID G2XMF0
description Hypothetical_protein OS=Oryza brachyantha GN=Ob12g0082E03_8 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15468: 48560-50074 , PASA_asmbl_15470: 51063-54167 , PASA_asmbl_15472: 51063-52520 , PASA_asmbl_15473: 52684-52994
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016734_070 0.0 - - hypothetical_protein [Oryza brachyantha]
2 Hb_005235_030 0.0925714815 - - PREDICTED: dolichol phosphate-mannose biosynthesis regulatory protein [Eucalyptus grandis]
3 Hb_002000_140 0.1081614842 - - PREDICTED: thioredoxin Y2, chloroplastic [Jatropha curcas]
4 Hb_000808_190 0.1110388592 - - PREDICTED: GTP-binding protein SAR1A-like [Eucalyptus grandis]
5 Hb_000463_130 0.1132857706 - - unnamed protein product [Coffea canephora]
6 Hb_001242_140 0.1146477212 - - mitochondrial carrier protein, putative [Ricinus communis]
7 Hb_000215_330 0.114739905 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
8 Hb_005306_070 0.115028047 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
9 Hb_003494_050 0.1159047729 - - hypothetical protein PRUPE_ppa013459mg [Prunus persica]
10 Hb_003376_190 0.117270764 - - syntaxin, putative [Ricinus communis]
11 Hb_006915_040 0.118350822 - - PREDICTED: prefoldin subunit 6 [Eucalyptus grandis]
12 Hb_179296_010 0.1205086532 - - hypothetical protein B456_006G094200 [Gossypium raimondii]
13 Hb_002613_020 0.1274984168 - - ADP-ribose pyrophosphatase, putative [Ricinus communis]
14 Hb_002314_010 0.1282127562 - - hypothetical protein JCGZ_15712 [Jatropha curcas]
15 Hb_005269_080 0.1285709428 - - protein with unknown function [Ricinus communis]
16 Hb_001373_060 0.1288838863 - - PREDICTED: structure-specific endonuclease subunit slx1 [Jatropha curcas]
17 Hb_007065_010 0.1314797539 - - hypothetical protein Csa_3G379730 [Cucumis sativus]
18 Hb_002324_010 0.1319697321 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
19 Hb_002303_060 0.1323122506 - - conserved hypothetical protein [Ricinus communis]
20 Hb_006573_020 0.1330924003 - - PREDICTED: 40S ribosomal protein S10-like [Jatropha curcas]

Gene co-expression network

sample Hb_016734_070 Hb_016734_070 Hb_005235_030 Hb_005235_030 Hb_016734_070--Hb_005235_030 Hb_002000_140 Hb_002000_140 Hb_016734_070--Hb_002000_140 Hb_000808_190 Hb_000808_190 Hb_016734_070--Hb_000808_190 Hb_000463_130 Hb_000463_130 Hb_016734_070--Hb_000463_130 Hb_001242_140 Hb_001242_140 Hb_016734_070--Hb_001242_140 Hb_000215_330 Hb_000215_330 Hb_016734_070--Hb_000215_330 Hb_003376_190 Hb_003376_190 Hb_005235_030--Hb_003376_190 Hb_179296_010 Hb_179296_010 Hb_005235_030--Hb_179296_010 Hb_001512_080 Hb_001512_080 Hb_005235_030--Hb_001512_080 Hb_007065_010 Hb_007065_010 Hb_005235_030--Hb_007065_010 Hb_000254_050 Hb_000254_050 Hb_005235_030--Hb_000254_050 Hb_000189_240 Hb_000189_240 Hb_002000_140--Hb_000189_240 Hb_002303_060 Hb_002303_060 Hb_002000_140--Hb_002303_060 Hb_000431_070 Hb_000431_070 Hb_002000_140--Hb_000431_070 Hb_002000_140--Hb_001512_080 Hb_001329_150 Hb_001329_150 Hb_002000_140--Hb_001329_150 Hb_005269_080 Hb_005269_080 Hb_002000_140--Hb_005269_080 Hb_006573_020 Hb_006573_020 Hb_000808_190--Hb_006573_020 Hb_001353_010 Hb_001353_010 Hb_000808_190--Hb_001353_010 Hb_000028_350 Hb_000028_350 Hb_000808_190--Hb_000028_350 Hb_000808_190--Hb_002000_140 Hb_005307_050 Hb_005307_050 Hb_000808_190--Hb_005307_050 Hb_000808_190--Hb_002303_060 Hb_000463_130--Hb_000215_330 Hb_002314_010 Hb_002314_010 Hb_000463_130--Hb_002314_010 Hb_000130_100 Hb_000130_100 Hb_000463_130--Hb_000130_100 Hb_000975_230 Hb_000975_230 Hb_000463_130--Hb_000975_230 Hb_000463_130--Hb_003376_190 Hb_001242_140--Hb_005307_050 Hb_002613_020 Hb_002613_020 Hb_001242_140--Hb_002613_020 Hb_001019_150 Hb_001019_150 Hb_001242_140--Hb_001019_150 Hb_003106_100 Hb_003106_100 Hb_001242_140--Hb_003106_100 Hb_186982_040 Hb_186982_040 Hb_001242_140--Hb_186982_040 Hb_005306_070 Hb_005306_070 Hb_000215_330--Hb_005306_070 Hb_000107_300 Hb_000107_300 Hb_000215_330--Hb_000107_300 Hb_000215_330--Hb_002314_010 Hb_000215_330--Hb_003376_190 Hb_003494_050 Hb_003494_050 Hb_000215_330--Hb_003494_050 Hb_000215_330--Hb_002303_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.90023 0.420178 6.06574 10.3318 2.47878 7.1239
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.5536 19.1075 7.07244 5.08725 6.0976

CAGE analysis