Hb_000347_330

Information

Type -
Description -
Location Contig347: 340835-346618
Sequence    

Annotation

kegg
ID atr:s00420p00013340
description AMTR_s00420p00013340; hypothetical protein
nr
ID ERN10468.1
description hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
swissprot
ID -
description -
trembl
ID A0A0A9S065
description Uncharacterized protein OS=Arundo donax PE=4 SV=1
Gene Ontology
ID GO:0008270
description hypothetical protein AMTR_s00420p00013340

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36228: 342774-348873
cDNA
(Sanger)
(ID:Location)		 016_P16.ab1: 342906-348873

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000347_330 0.0 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
2 Hb_000258_140 0.158272477 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000212_290 0.1588352651 - - PREDICTED: protein TIC 20-II, chloroplastic [Jatropha curcas]
4 Hb_000184_100 0.1655601826 - - IMP dehydrogenase/GMP reductase [Hevea brasiliensis]
5 Hb_024758_010 0.1821023249 - - PREDICTED: uncharacterized protein At2g23090-like [Jatropha curcas]
6 Hb_001284_030 0.1868593472 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
7 Hb_023711_010 0.1930319656 - - -
8 Hb_001454_260 0.1946200252 - - hypothetical protein RCOM_0681280 [Ricinus communis]
9 Hb_033153_060 0.1971787826 - - Transcription elongation factor, putative [Ricinus communis]
10 Hb_004976_070 0.198086189 - - eukaryotic translation initiation factor 2b, epsilon subunit, putative [Ricinus communis]
11 Hb_000207_400 0.1996666635 - - PREDICTED: protein-tyrosine-phosphatase PTP1 isoform X1 [Jatropha curcas]
12 Hb_000723_250 0.2002884705 - - hypothetical protein JCGZ_16520 [Jatropha curcas]
13 Hb_000834_030 0.2007847322 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
14 Hb_000175_320 0.2008489307 - - PREDICTED: formin-like protein 14 [Jatropha curcas]
15 Hb_007894_230 0.201763553 - - 30S ribosomal protein S14, putative [Ricinus communis]
16 Hb_000808_190 0.201876714 - - PREDICTED: GTP-binding protein SAR1A-like [Eucalyptus grandis]
17 Hb_001301_050 0.2028968682 - - -
18 Hb_000105_120 0.2029641865 - - PREDICTED: uncharacterized protein LOC105650827 [Jatropha curcas]
19 Hb_000577_090 0.2031638283 - - PREDICTED: 50S ribosomal protein L12-1, chloroplastic-like [Jatropha curcas]
20 Hb_008206_100 0.2032939386 - - PREDICTED: uncharacterized protein LOC105638302 [Jatropha curcas]

Gene co-expression network

sample Hb_000347_330 Hb_000347_330 Hb_000258_140 Hb_000258_140 Hb_000347_330--Hb_000258_140 Hb_000212_290 Hb_000212_290 Hb_000347_330--Hb_000212_290 Hb_000184_100 Hb_000184_100 Hb_000347_330--Hb_000184_100 Hb_024758_010 Hb_024758_010 Hb_000347_330--Hb_024758_010 Hb_001284_030 Hb_001284_030 Hb_000347_330--Hb_001284_030 Hb_023711_010 Hb_023711_010 Hb_000347_330--Hb_023711_010 Hb_000661_070 Hb_000661_070 Hb_000258_140--Hb_000661_070 Hb_000258_140--Hb_000212_290 Hb_009680_020 Hb_009680_020 Hb_000258_140--Hb_009680_020 Hb_007973_010 Hb_007973_010 Hb_000258_140--Hb_007973_010 Hb_019040_030 Hb_019040_030 Hb_000258_140--Hb_019040_030 Hb_001222_080 Hb_001222_080 Hb_000212_290--Hb_001222_080 Hb_007928_030 Hb_007928_030 Hb_000212_290--Hb_007928_030 Hb_005307_050 Hb_005307_050 Hb_000212_290--Hb_005307_050 Hb_000483_300 Hb_000483_300 Hb_000212_290--Hb_000483_300 Hb_001353_010 Hb_001353_010 Hb_000212_290--Hb_001353_010 Hb_000431_070 Hb_000431_070 Hb_000212_290--Hb_000431_070 Hb_000184_100--Hb_023711_010 Hb_001789_130 Hb_001789_130 Hb_000184_100--Hb_001789_130 Hb_004800_120 Hb_004800_120 Hb_000184_100--Hb_004800_120 Hb_004976_070 Hb_004976_070 Hb_000184_100--Hb_004976_070 Hb_007290_080 Hb_007290_080 Hb_000184_100--Hb_007290_080 Hb_024758_010--Hb_001284_030 Hb_000046_350 Hb_000046_350 Hb_024758_010--Hb_000046_350 Hb_001252_210 Hb_001252_210 Hb_024758_010--Hb_001252_210 Hb_024758_010--Hb_001353_010 Hb_002878_010 Hb_002878_010 Hb_024758_010--Hb_002878_010 Hb_001301_050 Hb_001301_050 Hb_024758_010--Hb_001301_050 Hb_001284_030--Hb_000046_350 Hb_002918_290 Hb_002918_290 Hb_001284_030--Hb_002918_290 Hb_000042_200 Hb_000042_200 Hb_001284_030--Hb_000042_200 Hb_033153_060 Hb_033153_060 Hb_001284_030--Hb_033153_060 Hb_068056_030 Hb_068056_030 Hb_001284_030--Hb_068056_030 Hb_161175_010 Hb_161175_010 Hb_001284_030--Hb_161175_010 Hb_000175_320 Hb_000175_320 Hb_023711_010--Hb_000175_320 Hb_000753_190 Hb_000753_190 Hb_023711_010--Hb_000753_190 Hb_023711_010--Hb_001301_050 Hb_086639_090 Hb_086639_090 Hb_023711_010--Hb_086639_090 Hb_000599_280 Hb_000599_280 Hb_023711_010--Hb_000599_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.48121 7.72087 4.00693 17.2338 1.11726 16.2021
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.2105 29.944 7.59879 4.62961 16.9671

CAGE analysis