Hb_001789_130

Information

Type -
Description -
Location Contig1789: 140113-151532
Sequence    

Annotation

kegg
ID pop:POPTR_0012s12960g
description POPTRDRAFT_570430; short-chain dehydrogenase Tic32 family protein
nr
ID XP_002318806.1
description short-chain dehydrogenase Tic32 family protein [Populus trichocarpa]
swissprot
ID Q6RVV4
description Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum GN=TIC32 PE=1 SV=1
trembl
ID B9I472
description Short-chain dehydrogenase Tic32 family protein OS=Populus trichocarpa GN=POPTR_0012s12960g PE=3 SV=1
Gene Ontology
ID GO:0008152
description short-chain dehydrogenase tic32 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17216: 130423-139607 , PASA_asmbl_17218: 140240-141247 , PASA_asmbl_17219: 141284-141687
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001789_130 0.0 - - short-chain dehydrogenase Tic32 family protein [Populus trichocarpa]
2 Hb_004800_120 0.1111388705 - - PREDICTED: maf-like protein DDB_G0281937 isoform X1 [Jatropha curcas]
3 Hb_000003_730 0.1279920397 - - DNA repair/transcription protein met18/mms19, putative [Ricinus communis]
4 Hb_004502_020 0.1329900571 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
5 Hb_000152_550 0.133608727 - - PREDICTED: UMP-CMP kinase [Vitis vinifera]
6 Hb_002016_120 0.1336682634 - - PREDICTED: uncharacterized protein OsI_027940 [Jatropha curcas]
7 Hb_001117_090 0.1343035853 - - PREDICTED: NADPH-dependent pterin aldehyde reductase [Jatropha curcas]
8 Hb_005400_030 0.1366572587 - - PREDICTED: LYR motif-containing protein At3g19508 [Jatropha curcas]
9 Hb_004195_210 0.1368014112 - - -
10 Hb_031089_040 0.1439159928 - - thioredoxin H-type 1 [Hevea brasiliensis]
11 Hb_000184_100 0.1440362959 - - IMP dehydrogenase/GMP reductase [Hevea brasiliensis]
12 Hb_148209_080 0.1464533952 - - MED32, putative [Theobroma cacao]
13 Hb_002207_110 0.1466009882 - - -
14 Hb_005656_050 0.1475324949 - - PREDICTED: protein FAM32A-like [Jatropha curcas]
15 Hb_003964_100 0.1480432923 - - PREDICTED: uncharacterized protein LOC103489178 [Cucumis melo]
16 Hb_000230_540 0.1491259468 - - PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial [Sesamum indicum]
17 Hb_000086_550 0.1517518988 - - Os02g0814700 [Oryza sativa Japonica Group]
18 Hb_000103_080 0.1522117413 - - PREDICTED: ATP-dependent RNA helicase SUV3, mitochondrial [Jatropha curcas]
19 Hb_005615_080 0.1531952737 - - PREDICTED: uncharacterized protein LOC105649609 [Jatropha curcas]
20 Hb_004032_100 0.1539335778 - - PREDICTED: regulator of nonsense transcripts UPF3-like [Jatropha curcas]

Gene co-expression network

sample Hb_001789_130 Hb_001789_130 Hb_004800_120 Hb_004800_120 Hb_001789_130--Hb_004800_120 Hb_000003_730 Hb_000003_730 Hb_001789_130--Hb_000003_730 Hb_004502_020 Hb_004502_020 Hb_001789_130--Hb_004502_020 Hb_000152_550 Hb_000152_550 Hb_001789_130--Hb_000152_550 Hb_002016_120 Hb_002016_120 Hb_001789_130--Hb_002016_120 Hb_001117_090 Hb_001117_090 Hb_001789_130--Hb_001117_090 Hb_004800_120--Hb_002016_120 Hb_004800_120--Hb_001117_090 Hb_005357_130 Hb_005357_130 Hb_004800_120--Hb_005357_130 Hb_000086_550 Hb_000086_550 Hb_004800_120--Hb_000086_550 Hb_006816_210 Hb_006816_210 Hb_004800_120--Hb_006816_210 Hb_004871_040 Hb_004871_040 Hb_004800_120--Hb_004871_040 Hb_007441_270 Hb_007441_270 Hb_000003_730--Hb_007441_270 Hb_004032_100 Hb_004032_100 Hb_000003_730--Hb_004032_100 Hb_031089_040 Hb_031089_040 Hb_000003_730--Hb_031089_040 Hb_000684_230 Hb_000684_230 Hb_000003_730--Hb_000684_230 Hb_002296_040 Hb_002296_040 Hb_000003_730--Hb_002296_040 Hb_000003_730--Hb_004502_020 Hb_000505_140 Hb_000505_140 Hb_004502_020--Hb_000505_140 Hb_004502_020--Hb_031089_040 Hb_000155_180 Hb_000155_180 Hb_004502_020--Hb_000155_180 Hb_002207_110 Hb_002207_110 Hb_004502_020--Hb_002207_110 Hb_032202_090 Hb_032202_090 Hb_004502_020--Hb_032202_090 Hb_000152_550--Hb_002207_110 Hb_005400_030 Hb_005400_030 Hb_000152_550--Hb_005400_030 Hb_000152_550--Hb_004032_100 Hb_003964_100 Hb_003964_100 Hb_000152_550--Hb_003964_100 Hb_101705_030 Hb_101705_030 Hb_000152_550--Hb_101705_030 Hb_029866_070 Hb_029866_070 Hb_000152_550--Hb_029866_070 Hb_008554_070 Hb_008554_070 Hb_002016_120--Hb_008554_070 Hb_024714_010 Hb_024714_010 Hb_002016_120--Hb_024714_010 Hb_006541_010 Hb_006541_010 Hb_002016_120--Hb_006541_010 Hb_001235_030 Hb_001235_030 Hb_002016_120--Hb_001235_030 Hb_033153_060 Hb_033153_060 Hb_002016_120--Hb_033153_060 Hb_000926_300 Hb_000926_300 Hb_001117_090--Hb_000926_300 Hb_003599_040 Hb_003599_040 Hb_001117_090--Hb_003599_040 Hb_000877_020 Hb_000877_020 Hb_001117_090--Hb_000877_020 Hb_000340_140 Hb_000340_140 Hb_001117_090--Hb_000340_140 Hb_009421_040 Hb_009421_040 Hb_001117_090--Hb_009421_040 Hb_001246_060 Hb_001246_060 Hb_001117_090--Hb_001246_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.955466 0.466671 0.795962 1.70903 2.17757 4.73976
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.5495 6.01129 1.89249 0.883922 2.09455

CAGE analysis