Hb_071130_040

Information

Type -
Description -
Location Contig71130: 68564-75508
Sequence    

Annotation

kegg
ID rcu:RCOM_0522460
description hypothetical protein
nr
ID XP_002522771.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LG26
description Poly(A)-specific ribonuclease PARN OS=Arabidopsis thaliana GN=PARN PE=1 SV=2
trembl
ID B9S9V2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0522460 PE=4 SV=1
Gene Ontology
ID GO:0005634
description poly -specific ribonuclease parn

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_071130_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_124621_010 0.1576879165 - - hypothetical protein L484_019698 [Morus notabilis]
3 Hb_012938_010 0.1909013577 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_004656_080 0.2122965836 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_001335_050 0.2232982616 - - -
6 Hb_107221_010 0.2326331275 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_005654_010 0.2362043625 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_007064_030 0.2411806156 - - polyprotein [Citrus endogenous pararetrovirus]
9 Hb_156924_020 0.2422573306 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
10 Hb_000757_090 0.2431394424 - - SPla/RYanodine receptor domain-containing protein isoform 3 [Theobroma cacao]
11 Hb_000375_180 0.2527625579 - - PREDICTED: uncharacterized protein LOC104593656 [Nelumbo nucifera]
12 Hb_094852_010 0.2594810183 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
13 Hb_126044_010 0.2646444722 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
14 Hb_001344_030 0.2809296643 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_178654_020 0.2820527777 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
16 Hb_000016_120 0.3015130433 - - PREDICTED: uncharacterized protein LOC104610208 [Nelumbo nucifera]
17 Hb_186054_010 0.3032425562 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_057207_010 0.3057842275 - - hypothetical protein F383_17010 [Gossypium arboreum]
19 Hb_065858_010 0.327477397 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
20 Hb_000545_120 0.3278006945 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]

Gene co-expression network

sample Hb_071130_040 Hb_071130_040 Hb_124621_010 Hb_124621_010 Hb_071130_040--Hb_124621_010 Hb_012938_010 Hb_012938_010 Hb_071130_040--Hb_012938_010 Hb_004656_080 Hb_004656_080 Hb_071130_040--Hb_004656_080 Hb_001335_050 Hb_001335_050 Hb_071130_040--Hb_001335_050 Hb_107221_010 Hb_107221_010 Hb_071130_040--Hb_107221_010 Hb_005654_010 Hb_005654_010 Hb_071130_040--Hb_005654_010 Hb_094852_010 Hb_094852_010 Hb_124621_010--Hb_094852_010 Hb_065858_010 Hb_065858_010 Hb_124621_010--Hb_065858_010 Hb_124621_010--Hb_012938_010 Hb_178654_020 Hb_178654_020 Hb_124621_010--Hb_178654_020 Hb_031474_030 Hb_031474_030 Hb_124621_010--Hb_031474_030 Hb_012938_010--Hb_005654_010 Hb_000375_180 Hb_000375_180 Hb_012938_010--Hb_000375_180 Hb_002811_340 Hb_002811_340 Hb_012938_010--Hb_002811_340 Hb_000016_120 Hb_000016_120 Hb_012938_010--Hb_000016_120 Hb_156924_020 Hb_156924_020 Hb_012938_010--Hb_156924_020 Hb_000043_100 Hb_000043_100 Hb_004656_080--Hb_000043_100 Hb_007064_030 Hb_007064_030 Hb_004656_080--Hb_007064_030 Hb_004511_060 Hb_004511_060 Hb_004656_080--Hb_004511_060 Hb_012717_030 Hb_012717_030 Hb_004656_080--Hb_012717_030 Hb_001344_030 Hb_001344_030 Hb_004656_080--Hb_001344_030 Hb_001335_050--Hb_107221_010 Hb_001335_050--Hb_005654_010 Hb_057207_010 Hb_057207_010 Hb_001335_050--Hb_057207_010 Hb_001335_050--Hb_000375_180 Hb_001335_050--Hb_007064_030 Hb_107221_010--Hb_124621_010 Hb_107221_010--Hb_005654_010 Hb_107221_010--Hb_057207_010 Hb_107221_010--Hb_178654_020 Hb_005654_010--Hb_000375_180 Hb_104721_010 Hb_104721_010 Hb_005654_010--Hb_104721_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00897646 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0205716 0.0161868 0 0 0.0342891

CAGE analysis