Hb_004656_080

Information

Type -
Description -
Location Contig4656: 159166-163562
Sequence    

Annotation

kegg
ID egr:104417177
description uncharacterized LOC104417177
nr
ID XP_007050046.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID Q99315
description Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3
trembl
ID A0A061DW51
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_003698 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004656_080 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_071130_040 0.2122965836 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000043_100 0.2421079718 - - PREDICTED: uncharacterized protein LOC105797583 [Gossypium raimondii]
4 Hb_007064_030 0.2519374691 - - polyprotein [Citrus endogenous pararetrovirus]
5 Hb_004511_060 0.2746331808 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103328625 [Prunus mume]
6 Hb_012717_030 0.2758367393 - - hypothetical protein, partial [Pseudomonas fluorescens]
7 Hb_001344_030 0.2793489395 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_093912_010 0.2825518864 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
9 Hb_007970_040 0.2889980337 - - PREDICTED: uncharacterized protein LOC104587672 [Nelumbo nucifera]
10 Hb_005654_010 0.291103831 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_162086_010 0.2940033295 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
12 Hb_012938_010 0.2952877321 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
13 Hb_180455_010 0.29832617 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
14 Hb_186054_010 0.3024626069 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
15 Hb_113541_010 0.306931455 - - PREDICTED: uncharacterized protein LOC105762713 [Gossypium raimondii]
16 Hb_000375_180 0.3102065129 - - PREDICTED: uncharacterized protein LOC104593656 [Nelumbo nucifera]
17 Hb_000545_120 0.3146273398 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
18 Hb_000976_200 0.3199219478 - - -
19 Hb_158235_010 0.3220174561 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
20 Hb_000340_540 0.3226714348 - - PREDICTED: peroxidase 39-like [Jatropha curcas]

Gene co-expression network

sample Hb_004656_080 Hb_004656_080 Hb_071130_040 Hb_071130_040 Hb_004656_080--Hb_071130_040 Hb_000043_100 Hb_000043_100 Hb_004656_080--Hb_000043_100 Hb_007064_030 Hb_007064_030 Hb_004656_080--Hb_007064_030 Hb_004511_060 Hb_004511_060 Hb_004656_080--Hb_004511_060 Hb_012717_030 Hb_012717_030 Hb_004656_080--Hb_012717_030 Hb_001344_030 Hb_001344_030 Hb_004656_080--Hb_001344_030 Hb_124621_010 Hb_124621_010 Hb_071130_040--Hb_124621_010 Hb_012938_010 Hb_012938_010 Hb_071130_040--Hb_012938_010 Hb_001335_050 Hb_001335_050 Hb_071130_040--Hb_001335_050 Hb_107221_010 Hb_107221_010 Hb_071130_040--Hb_107221_010 Hb_005654_010 Hb_005654_010 Hb_071130_040--Hb_005654_010 Hb_013253_030 Hb_013253_030 Hb_000043_100--Hb_013253_030 Hb_158235_010 Hb_158235_010 Hb_000043_100--Hb_158235_010 Hb_009572_010 Hb_009572_010 Hb_000043_100--Hb_009572_010 Hb_000329_520 Hb_000329_520 Hb_000043_100--Hb_000329_520 Hb_000367_140 Hb_000367_140 Hb_000043_100--Hb_000367_140 Hb_000816_220 Hb_000816_220 Hb_000043_100--Hb_000816_220 Hb_126044_010 Hb_126044_010 Hb_007064_030--Hb_126044_010 Hb_007064_030--Hb_071130_040 Hb_003927_060 Hb_003927_060 Hb_007064_030--Hb_003927_060 Hb_057207_010 Hb_057207_010 Hb_007064_030--Hb_057207_010 Hb_007064_030--Hb_001335_050 Hb_093912_010 Hb_093912_010 Hb_004511_060--Hb_093912_010 Hb_113541_010 Hb_113541_010 Hb_004511_060--Hb_113541_010 Hb_007970_040 Hb_007970_040 Hb_004511_060--Hb_007970_040 Hb_162086_010 Hb_162086_010 Hb_004511_060--Hb_162086_010 Hb_000976_200 Hb_000976_200 Hb_004511_060--Hb_000976_200 Hb_111854_010 Hb_111854_010 Hb_004511_060--Hb_111854_010 Hb_104721_010 Hb_104721_010 Hb_012717_030--Hb_104721_010 Hb_000011_470 Hb_000011_470 Hb_012717_030--Hb_000011_470 Hb_006111_040 Hb_006111_040 Hb_012717_030--Hb_006111_040 Hb_000060_070 Hb_000060_070 Hb_012717_030--Hb_000060_070 Hb_012707_020 Hb_012707_020 Hb_012717_030--Hb_012707_020 Hb_002200_100 Hb_002200_100 Hb_012717_030--Hb_002200_100 Hb_000757_090 Hb_000757_090 Hb_001344_030--Hb_000757_090 Hb_186054_010 Hb_186054_010 Hb_001344_030--Hb_186054_010 Hb_156924_020 Hb_156924_020 Hb_001344_030--Hb_156924_020 Hb_001344_030--Hb_158235_010 Hb_001344_030--Hb_104721_010 Hb_094852_010 Hb_094852_010 Hb_001344_030--Hb_094852_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.014559 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0133717 0.0105227 0 0 0.0674444

CAGE analysis