Hb_002200_100

Information

Type -
Description -
Location Contig2200: 82416-83835
Sequence    

Annotation

kegg
ID pop:POPTR_0005s21080g
description POPTRDRAFT_559341; putative pathogenesis-related family protein
nr
ID XP_012066068.1
description PREDICTED: pathogen-related protein-like [Jatropha curcas]
swissprot
ID P16273
description Pathogen-related protein OS=Hordeum vulgare PE=2 SV=2
trembl
ID A0A067L3N2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25223 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22683: 82438-83669
cDNA
(Sanger)
(ID:Location)		 003_B14.ab1: 82581-83666 , 008_P10.ab1: 82617-83667 , 009_O18.ab1: 82630-83666

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002200_100 0.0 - - PREDICTED: pathogen-related protein-like [Jatropha curcas]
2 Hb_000668_210 0.1474168387 - - hypothetical protein PHAVU_006G031500g [Phaseolus vulgaris]
3 Hb_154430_010 0.1928016108 - - PREDICTED: uncharacterized protein LOC105637632 isoform X2 [Jatropha curcas]
4 Hb_003746_020 0.2002252805 - - PREDICTED: magnesium-chelatase subunit ChlH, chloroplastic [Gossypium raimondii]
5 Hb_004010_080 0.2008654781 - - alcohol dehydrogenase, putative [Ricinus communis]
6 Hb_006111_040 0.2136965488 - - PREDICTED: uncharacterized protein LOC103485923 [Cucumis melo]
7 Hb_130507_020 0.2157795241 - - -
8 Hb_012753_070 0.2171088998 - - hypothetical protein VITISV_033646 [Vitis vinifera]
9 Hb_000920_020 0.2227155375 - - OSJNBa0004L19.22 [Oryza sativa Japonica Group]
10 Hb_000476_030 0.2230024886 - - PREDICTED: uncharacterized protein LOC105629366 [Jatropha curcas]
11 Hb_005029_030 0.2254470104 - - PREDICTED: LOW QUALITY PROTEIN: 36.4 kDa proline-rich protein-like [Sesamum indicum]
12 Hb_003540_170 0.2264869866 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial-like [Jatropha curcas]
13 Hb_000135_080 0.2265501857 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
14 Hb_000018_130 0.2309602942 - - PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]
15 Hb_005666_030 0.2323340969 - - PREDICTED: uncharacterized protein LOC103489421 [Cucumis melo]
16 Hb_005551_030 0.2324175944 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
17 Hb_004968_090 0.2326724291 - - PREDICTED: uncharacterized protein LOC104882781 [Vitis vinifera]
18 Hb_001231_020 0.2334032036 - - -
19 Hb_028527_010 0.2340158788 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
20 Hb_003336_020 0.2340819183 - - PREDICTED: probable sodium/metabolite cotransporter BASS3, chloroplastic [Vitis vinifera]

Gene co-expression network

sample Hb_002200_100 Hb_002200_100 Hb_000668_210 Hb_000668_210 Hb_002200_100--Hb_000668_210 Hb_154430_010 Hb_154430_010 Hb_002200_100--Hb_154430_010 Hb_003746_020 Hb_003746_020 Hb_002200_100--Hb_003746_020 Hb_004010_080 Hb_004010_080 Hb_002200_100--Hb_004010_080 Hb_006111_040 Hb_006111_040 Hb_002200_100--Hb_006111_040 Hb_130507_020 Hb_130507_020 Hb_002200_100--Hb_130507_020 Hb_000668_210--Hb_130507_020 Hb_001244_030 Hb_001244_030 Hb_000668_210--Hb_001244_030 Hb_002249_200 Hb_002249_200 Hb_000668_210--Hb_002249_200 Hb_007908_010 Hb_007908_010 Hb_000668_210--Hb_007908_010 Hb_025528_010 Hb_025528_010 Hb_000668_210--Hb_025528_010 Hb_154430_010--Hb_003746_020 Hb_006970_010 Hb_006970_010 Hb_154430_010--Hb_006970_010 Hb_000710_160 Hb_000710_160 Hb_154430_010--Hb_000710_160 Hb_009316_050 Hb_009316_050 Hb_154430_010--Hb_009316_050 Hb_079526_010 Hb_079526_010 Hb_154430_010--Hb_079526_010 Hb_088080_030 Hb_088080_030 Hb_003746_020--Hb_088080_030 Hb_000920_020 Hb_000920_020 Hb_003746_020--Hb_000920_020 Hb_003746_020--Hb_000710_160 Hb_189099_020 Hb_189099_020 Hb_003746_020--Hb_189099_020 Hb_062192_060 Hb_062192_060 Hb_003746_020--Hb_062192_060 Hb_000858_050 Hb_000858_050 Hb_004010_080--Hb_000858_050 Hb_001001_130 Hb_001001_130 Hb_004010_080--Hb_001001_130 Hb_000270_040 Hb_000270_040 Hb_004010_080--Hb_000270_040 Hb_000282_100 Hb_000282_100 Hb_004010_080--Hb_000282_100 Hb_015807_020 Hb_015807_020 Hb_004010_080--Hb_015807_020 Hb_005029_030 Hb_005029_030 Hb_004010_080--Hb_005029_030 Hb_151401_010 Hb_151401_010 Hb_006111_040--Hb_151401_010 Hb_002529_070 Hb_002529_070 Hb_006111_040--Hb_002529_070 Hb_000011_470 Hb_000011_470 Hb_006111_040--Hb_000011_470 Hb_001981_020 Hb_001981_020 Hb_006111_040--Hb_001981_020 Hb_007533_050 Hb_007533_050 Hb_006111_040--Hb_007533_050 Hb_006455_020 Hb_006455_020 Hb_006111_040--Hb_006455_020 Hb_024404_040 Hb_024404_040 Hb_130507_020--Hb_024404_040 Hb_130507_020--Hb_007908_010 Hb_001951_160 Hb_001951_160 Hb_130507_020--Hb_001951_160 Hb_000922_210 Hb_000922_210 Hb_130507_020--Hb_000922_210 Hb_002217_290 Hb_002217_290 Hb_130507_020--Hb_002217_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.131011 0.785752 33.81 6.90529 0.0739406 0.135798
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.82705 33.558 0.812867 35.5143 321.867

CAGE analysis