Hb_001951_160

Information

Type -
Description -
Location Contig1951: 130388-130863
Sequence    

Annotation

kegg
ID mdm:103440138
description putative ribonuclease H protein At1g65750
nr
ID XP_008377029.1
description PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
swissprot
ID -
description -
trembl
ID A0A0D2PJN8
description Gossypium raimondii chromosome 7, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_007G356800 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001951_160 0.0 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
2 Hb_024404_040 0.0362720266 - - hypothetical protein JCGZ_22351 [Jatropha curcas]
3 Hb_001623_120 0.0905796203 - - PREDICTED: uncharacterized protein LOC105650382 isoform X2 [Jatropha curcas]
4 Hb_000788_140 0.1219934665 - - conserved hypothetical protein [Ricinus communis]
5 Hb_130507_020 0.1717673923 - - -
6 Hb_007908_010 0.2325035694 - - -
7 Hb_000922_210 0.2390082695 - - PREDICTED: 50S ribosomal protein L12, chloroplastic [Jatropha curcas]
8 Hb_002217_290 0.2400899635 - - hypothetical protein JCGZ_19038 [Jatropha curcas]
9 Hb_000731_120 0.2553989011 - - Beta-glucosidase, putative [Ricinus communis]
10 Hb_006995_030 0.2639203749 - - PREDICTED: uncharacterized protein LOC102663993 [Glycine max]
11 Hb_003226_270 0.2641141002 - - hypothetical protein POPTR_0014s12390g [Populus trichocarpa]
12 Hb_130470_010 0.2641369665 - - hypothetical protein, partial [Pseudomonas tolaasii]
13 Hb_163434_010 0.2647621173 - - hypothetical protein JCGZ_13470 [Jatropha curcas]
14 Hb_108331_010 0.264988401 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
15 Hb_085438_010 0.2655069338 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
16 Hb_002431_070 0.265517155 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA11 [Jatropha curcas]
17 Hb_004730_030 0.2655468296 - - synaptonemal complex protein, putative [Ricinus communis]
18 Hb_000676_210 0.2659019587 - - Cytochrome P450 superfamily protein [Theobroma cacao]
19 Hb_003207_140 0.2659379316 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
20 Hb_004337_010 0.2663078007 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_001951_160 Hb_001951_160 Hb_024404_040 Hb_024404_040 Hb_001951_160--Hb_024404_040 Hb_001623_120 Hb_001623_120 Hb_001951_160--Hb_001623_120 Hb_000788_140 Hb_000788_140 Hb_001951_160--Hb_000788_140 Hb_130507_020 Hb_130507_020 Hb_001951_160--Hb_130507_020 Hb_007908_010 Hb_007908_010 Hb_001951_160--Hb_007908_010 Hb_000922_210 Hb_000922_210 Hb_001951_160--Hb_000922_210 Hb_024404_040--Hb_001623_120 Hb_024404_040--Hb_130507_020 Hb_024404_040--Hb_000788_140 Hb_024404_040--Hb_007908_010 Hb_000731_120 Hb_000731_120 Hb_024404_040--Hb_000731_120 Hb_001623_120--Hb_000788_140 Hb_001623_120--Hb_130507_020 Hb_001623_120--Hb_000922_210 Hb_002217_290 Hb_002217_290 Hb_001623_120--Hb_002217_290 Hb_003938_040 Hb_003938_040 Hb_000788_140--Hb_003938_040 Hb_007108_060 Hb_007108_060 Hb_000788_140--Hb_007108_060 Hb_100451_010 Hb_100451_010 Hb_000788_140--Hb_100451_010 Hb_000668_210 Hb_000668_210 Hb_130507_020--Hb_000668_210 Hb_130507_020--Hb_007908_010 Hb_130507_020--Hb_000922_210 Hb_130507_020--Hb_002217_290 Hb_000474_020 Hb_000474_020 Hb_007908_010--Hb_000474_020 Hb_003683_100 Hb_003683_100 Hb_007908_010--Hb_003683_100 Hb_007924_040 Hb_007924_040 Hb_007908_010--Hb_007924_040 Hb_001072_060 Hb_001072_060 Hb_007908_010--Hb_001072_060 Hb_035484_010 Hb_035484_010 Hb_007908_010--Hb_035484_010 Hb_000922_210--Hb_002217_290 Hb_000922_210--Hb_000668_210 Hb_001226_190 Hb_001226_190 Hb_000922_210--Hb_001226_190 Hb_000922_210--Hb_024404_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0644734 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.152853 0 0 0.269772

CAGE analysis