Hb_001623_120

Information

Type -
Description -
Location Contig1623: 66435-66674
Sequence    

Annotation

kegg
ID tcc:TCM_020429
description hypothetical protein
nr
ID XP_012092664.1
description PREDICTED: uncharacterized protein LOC105650382 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067J9A9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06427 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14684: 67204-73057
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001623_120 0.0 - - PREDICTED: uncharacterized protein LOC105650382 isoform X2 [Jatropha curcas]
2 Hb_001951_160 0.0905796203 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
3 Hb_024404_040 0.1221486116 - - hypothetical protein JCGZ_22351 [Jatropha curcas]
4 Hb_000788_140 0.1270742387 - - conserved hypothetical protein [Ricinus communis]
5 Hb_130507_020 0.2383155489 - - -
6 Hb_000922_210 0.2576568975 - - PREDICTED: 50S ribosomal protein L12, chloroplastic [Jatropha curcas]
7 Hb_002217_290 0.2578485526 - - hypothetical protein JCGZ_19038 [Jatropha curcas]
8 Hb_000062_210 0.2622680048 - - PREDICTED: BAHD acyltransferase At5g47980-like [Pyrus x bretschneideri]
9 Hb_002085_040 0.2684651336 - - structural constituent of cell wall, putative [Ricinus communis]
10 Hb_000731_120 0.2952075002 - - Beta-glucosidase, putative [Ricinus communis]
11 Hb_137862_010 0.3007988979 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
12 Hb_007908_010 0.3176613388 - - -
13 Hb_012490_020 0.3231885857 - - PREDICTED: protein phosphatase 2C 77 [Jatropha curcas]
14 Hb_007108_060 0.3264445395 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
15 Hb_006995_030 0.3273620494 - - PREDICTED: uncharacterized protein LOC102663993 [Glycine max]
16 Hb_030627_010 0.3281092326 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g05700 [Sesamum indicum]
17 Hb_003226_270 0.3314468066 - - hypothetical protein POPTR_0014s12390g [Populus trichocarpa]
18 Hb_130470_010 0.3315376298 - - hypothetical protein, partial [Pseudomonas tolaasii]
19 Hb_003938_040 0.3319908856 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF098-like [Jatropha curcas]
20 Hb_163434_010 0.3335151369 - - hypothetical protein JCGZ_13470 [Jatropha curcas]

Gene co-expression network

sample Hb_001623_120 Hb_001623_120 Hb_001951_160 Hb_001951_160 Hb_001623_120--Hb_001951_160 Hb_024404_040 Hb_024404_040 Hb_001623_120--Hb_024404_040 Hb_000788_140 Hb_000788_140 Hb_001623_120--Hb_000788_140 Hb_130507_020 Hb_130507_020 Hb_001623_120--Hb_130507_020 Hb_000922_210 Hb_000922_210 Hb_001623_120--Hb_000922_210 Hb_002217_290 Hb_002217_290 Hb_001623_120--Hb_002217_290 Hb_001951_160--Hb_024404_040 Hb_001951_160--Hb_000788_140 Hb_001951_160--Hb_130507_020 Hb_007908_010 Hb_007908_010 Hb_001951_160--Hb_007908_010 Hb_001951_160--Hb_000922_210 Hb_024404_040--Hb_130507_020 Hb_024404_040--Hb_000788_140 Hb_024404_040--Hb_007908_010 Hb_000731_120 Hb_000731_120 Hb_024404_040--Hb_000731_120 Hb_003938_040 Hb_003938_040 Hb_000788_140--Hb_003938_040 Hb_007108_060 Hb_007108_060 Hb_000788_140--Hb_007108_060 Hb_100451_010 Hb_100451_010 Hb_000788_140--Hb_100451_010 Hb_000668_210 Hb_000668_210 Hb_130507_020--Hb_000668_210 Hb_130507_020--Hb_007908_010 Hb_130507_020--Hb_000922_210 Hb_130507_020--Hb_002217_290 Hb_000922_210--Hb_002217_290 Hb_000922_210--Hb_000668_210 Hb_001226_190 Hb_001226_190 Hb_000922_210--Hb_001226_190 Hb_000922_210--Hb_024404_040 Hb_002217_290--Hb_001226_190 Hb_002217_290--Hb_000668_210 Hb_002217_290--Hb_001951_160 Hb_002217_290--Hb_024404_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.318535 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.569263 0 0 0.74971

CAGE analysis