Hb_000788_140

Information

Type -
Description -
Location Contig788: 132877-137143
Sequence    

Annotation

kegg
ID rcu:RCOM_0618980
description hypothetical protein
nr
ID XP_002528850.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SS81
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0618980 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000788_140 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001951_160 0.1219934665 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
3 Hb_001623_120 0.1270742387 - - PREDICTED: uncharacterized protein LOC105650382 isoform X2 [Jatropha curcas]
4 Hb_024404_040 0.1520336824 - - hypothetical protein JCGZ_22351 [Jatropha curcas]
5 Hb_003938_040 0.2285547192 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF098-like [Jatropha curcas]
6 Hb_007108_060 0.2285747868 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
7 Hb_100451_010 0.2357043951 - - -
8 Hb_027472_200 0.2458373991 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
9 Hb_006995_030 0.2526956905 - - PREDICTED: uncharacterized protein LOC102663993 [Glycine max]
10 Hb_130507_020 0.2555934008 - - -
11 Hb_000749_100 0.2617066488 - - -
12 Hb_003226_270 0.2635220576 - - hypothetical protein POPTR_0014s12390g [Populus trichocarpa]
13 Hb_130470_010 0.263740121 - - hypothetical protein, partial [Pseudomonas tolaasii]
14 Hb_163434_010 0.2683303661 - - hypothetical protein JCGZ_13470 [Jatropha curcas]
15 Hb_108331_010 0.269643502 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
16 Hb_085438_010 0.2723064032 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
17 Hb_002431_070 0.2723552018 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA11 [Jatropha curcas]
18 Hb_004730_030 0.2724962008 - - synaptonemal complex protein, putative [Ricinus communis]
19 Hb_000922_210 0.2727976623 - - PREDICTED: 50S ribosomal protein L12, chloroplastic [Jatropha curcas]
20 Hb_002217_290 0.2730603127 - - hypothetical protein JCGZ_19038 [Jatropha curcas]

Gene co-expression network

sample Hb_000788_140 Hb_000788_140 Hb_001951_160 Hb_001951_160 Hb_000788_140--Hb_001951_160 Hb_001623_120 Hb_001623_120 Hb_000788_140--Hb_001623_120 Hb_024404_040 Hb_024404_040 Hb_000788_140--Hb_024404_040 Hb_003938_040 Hb_003938_040 Hb_000788_140--Hb_003938_040 Hb_007108_060 Hb_007108_060 Hb_000788_140--Hb_007108_060 Hb_100451_010 Hb_100451_010 Hb_000788_140--Hb_100451_010 Hb_001951_160--Hb_024404_040 Hb_001951_160--Hb_001623_120 Hb_130507_020 Hb_130507_020 Hb_001951_160--Hb_130507_020 Hb_007908_010 Hb_007908_010 Hb_001951_160--Hb_007908_010 Hb_000922_210 Hb_000922_210 Hb_001951_160--Hb_000922_210 Hb_001623_120--Hb_024404_040 Hb_001623_120--Hb_130507_020 Hb_001623_120--Hb_000922_210 Hb_002217_290 Hb_002217_290 Hb_001623_120--Hb_002217_290 Hb_024404_040--Hb_130507_020 Hb_024404_040--Hb_007908_010 Hb_000731_120 Hb_000731_120 Hb_024404_040--Hb_000731_120 Hb_003938_040--Hb_007108_060 Hb_003938_040--Hb_100451_010 Hb_027472_200 Hb_027472_200 Hb_003938_040--Hb_027472_200 Hb_006995_030 Hb_006995_030 Hb_003938_040--Hb_006995_030 Hb_003226_270 Hb_003226_270 Hb_003938_040--Hb_003226_270 Hb_130470_010 Hb_130470_010 Hb_003938_040--Hb_130470_010 Hb_007108_060--Hb_100451_010 Hb_007108_060--Hb_006995_030 Hb_007108_060--Hb_027472_200 Hb_007108_060--Hb_003226_270 Hb_007108_060--Hb_130470_010 Hb_100451_010--Hb_027472_200 Hb_100451_010--Hb_006995_030 Hb_100451_010--Hb_003226_270 Hb_100451_010--Hb_130470_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0286983 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.129782 0 0 0.128109

CAGE analysis