Hb_130507_020

Information

Type -
Description -
Location Contig130507: 2814-3621
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_130507_020 0.0 - - -
2 Hb_000668_210 0.1068677602 - - hypothetical protein PHAVU_006G031500g [Phaseolus vulgaris]
3 Hb_024404_040 0.148152292 - - hypothetical protein JCGZ_22351 [Jatropha curcas]
4 Hb_007908_010 0.1673008785 - - -
5 Hb_001951_160 0.1717673923 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
6 Hb_000922_210 0.1769744756 - - PREDICTED: 50S ribosomal protein L12, chloroplastic [Jatropha curcas]
7 Hb_002217_290 0.1795601983 - - hypothetical protein JCGZ_19038 [Jatropha curcas]
8 Hb_002200_100 0.2157795241 - - PREDICTED: pathogen-related protein-like [Jatropha curcas]
9 Hb_002249_200 0.2322308848 transcription factor TF Family: LFY LEAFY-like protein [Pistacia chinensis]
10 Hb_025528_010 0.2332346598 - - PREDICTED: uncharacterized protein LOC102596706 [Solanum tuberosum]
11 Hb_005542_170 0.2367290424 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_001623_120 0.2383155489 - - PREDICTED: uncharacterized protein LOC105650382 isoform X2 [Jatropha curcas]
13 Hb_001244_030 0.2427128407 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_012753_070 0.247072371 - - hypothetical protein VITISV_033646 [Vitis vinifera]
15 Hb_000731_120 0.24776571 - - Beta-glucosidase, putative [Ricinus communis]
16 Hb_035484_010 0.2478182824 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
17 Hb_001072_060 0.2507297826 - - PREDICTED: uncharacterized protein LOC105645525 [Jatropha curcas]
18 Hb_007924_040 0.2515466928 - - PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 [Populus euphratica]
19 Hb_003683_100 0.2516929924 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
20 Hb_000474_020 0.2519786549 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]

Gene co-expression network

sample Hb_130507_020 Hb_130507_020 Hb_000668_210 Hb_000668_210 Hb_130507_020--Hb_000668_210 Hb_024404_040 Hb_024404_040 Hb_130507_020--Hb_024404_040 Hb_007908_010 Hb_007908_010 Hb_130507_020--Hb_007908_010 Hb_001951_160 Hb_001951_160 Hb_130507_020--Hb_001951_160 Hb_000922_210 Hb_000922_210 Hb_130507_020--Hb_000922_210 Hb_002217_290 Hb_002217_290 Hb_130507_020--Hb_002217_290 Hb_002200_100 Hb_002200_100 Hb_000668_210--Hb_002200_100 Hb_001244_030 Hb_001244_030 Hb_000668_210--Hb_001244_030 Hb_002249_200 Hb_002249_200 Hb_000668_210--Hb_002249_200 Hb_000668_210--Hb_007908_010 Hb_025528_010 Hb_025528_010 Hb_000668_210--Hb_025528_010 Hb_024404_040--Hb_001951_160 Hb_001623_120 Hb_001623_120 Hb_024404_040--Hb_001623_120 Hb_000788_140 Hb_000788_140 Hb_024404_040--Hb_000788_140 Hb_024404_040--Hb_007908_010 Hb_000731_120 Hb_000731_120 Hb_024404_040--Hb_000731_120 Hb_000474_020 Hb_000474_020 Hb_007908_010--Hb_000474_020 Hb_003683_100 Hb_003683_100 Hb_007908_010--Hb_003683_100 Hb_007924_040 Hb_007924_040 Hb_007908_010--Hb_007924_040 Hb_001072_060 Hb_001072_060 Hb_007908_010--Hb_001072_060 Hb_035484_010 Hb_035484_010 Hb_007908_010--Hb_035484_010 Hb_001951_160--Hb_001623_120 Hb_001951_160--Hb_000788_140 Hb_001951_160--Hb_007908_010 Hb_001951_160--Hb_000922_210 Hb_000922_210--Hb_002217_290 Hb_000922_210--Hb_000668_210 Hb_001226_190 Hb_001226_190 Hb_000922_210--Hb_001226_190 Hb_000922_210--Hb_024404_040 Hb_002217_290--Hb_001226_190 Hb_002217_290--Hb_000668_210 Hb_002217_290--Hb_001951_160 Hb_002217_290--Hb_024404_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0876706 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.202041 0 0.0274528 0.66252

CAGE analysis