Hb_024404_040

Information

Type -
Description -
Location Contig24404: 23863-30126
Sequence    

Annotation

kegg
ID rcu:RCOM_0871490
description Anter-specific proline-rich protein APG, putative
nr
ID KDP43724.1
description hypothetical protein JCGZ_22351 [Jatropha curcas]
swissprot
ID Q9FIA1
description GDSL esterase/lipase At5g55050 OS=Arabidopsis thaliana GN=At5g55050 PE=2 SV=1
trembl
ID A0A067LHS0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22351 PE=4 SV=1
Gene Ontology
ID GO:0016491
description gdsl esterase lipase at5g55050-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024404_040 0.0 - - hypothetical protein JCGZ_22351 [Jatropha curcas]
2 Hb_001951_160 0.0362720266 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
3 Hb_001623_120 0.1221486116 - - PREDICTED: uncharacterized protein LOC105650382 isoform X2 [Jatropha curcas]
4 Hb_130507_020 0.148152292 - - -
5 Hb_000788_140 0.1520336824 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007908_010 0.1996718786 - - -
7 Hb_000731_120 0.2383904843 - - Beta-glucosidase, putative [Ricinus communis]
8 Hb_000922_210 0.2395451238 - - PREDICTED: 50S ribosomal protein L12, chloroplastic [Jatropha curcas]
9 Hb_002217_290 0.2409816744 - - hypothetical protein JCGZ_19038 [Jatropha curcas]
10 Hb_000668_210 0.2445012818 - - hypothetical protein PHAVU_006G031500g [Phaseolus vulgaris]
11 Hb_003207_140 0.253776298 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
12 Hb_004337_010 0.2537765685 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_002223_010 0.2537766489 - - hypothetical protein VITISV_009489 [Vitis vinifera]
14 Hb_000676_210 0.2537779856 - - Cytochrome P450 superfamily protein [Theobroma cacao]
15 Hb_029793_020 0.2537792135 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
16 Hb_029154_020 0.2537801008 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_004730_030 0.2538140539 - - synaptonemal complex protein, putative [Ricinus communis]
18 Hb_002431_070 0.2538188416 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA11 [Jatropha curcas]
19 Hb_085438_010 0.2538205608 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
20 Hb_108331_010 0.253964131 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]

Gene co-expression network

sample Hb_024404_040 Hb_024404_040 Hb_001951_160 Hb_001951_160 Hb_024404_040--Hb_001951_160 Hb_001623_120 Hb_001623_120 Hb_024404_040--Hb_001623_120 Hb_130507_020 Hb_130507_020 Hb_024404_040--Hb_130507_020 Hb_000788_140 Hb_000788_140 Hb_024404_040--Hb_000788_140 Hb_007908_010 Hb_007908_010 Hb_024404_040--Hb_007908_010 Hb_000731_120 Hb_000731_120 Hb_024404_040--Hb_000731_120 Hb_001951_160--Hb_001623_120 Hb_001951_160--Hb_000788_140 Hb_001951_160--Hb_130507_020 Hb_001951_160--Hb_007908_010 Hb_000922_210 Hb_000922_210 Hb_001951_160--Hb_000922_210 Hb_001623_120--Hb_000788_140 Hb_001623_120--Hb_130507_020 Hb_001623_120--Hb_000922_210 Hb_002217_290 Hb_002217_290 Hb_001623_120--Hb_002217_290 Hb_000668_210 Hb_000668_210 Hb_130507_020--Hb_000668_210 Hb_130507_020--Hb_007908_010 Hb_130507_020--Hb_000922_210 Hb_130507_020--Hb_002217_290 Hb_003938_040 Hb_003938_040 Hb_000788_140--Hb_003938_040 Hb_007108_060 Hb_007108_060 Hb_000788_140--Hb_007108_060 Hb_100451_010 Hb_100451_010 Hb_000788_140--Hb_100451_010 Hb_000474_020 Hb_000474_020 Hb_007908_010--Hb_000474_020 Hb_003683_100 Hb_003683_100 Hb_007908_010--Hb_003683_100 Hb_007924_040 Hb_007924_040 Hb_007908_010--Hb_007924_040 Hb_001072_060 Hb_001072_060 Hb_007908_010--Hb_001072_060 Hb_035484_010 Hb_035484_010 Hb_007908_010--Hb_035484_010 Hb_137862_010 Hb_137862_010 Hb_000731_120--Hb_137862_010 Hb_000152_750 Hb_000152_750 Hb_000731_120--Hb_000152_750 Hb_000731_120--Hb_130507_020 Hb_000731_120--Hb_001951_160 Hb_004511_060 Hb_004511_060 Hb_000731_120--Hb_004511_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.00715294 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0163605 0 0 0.034648

CAGE analysis