Hb_000152_750

Information

Type -
Description -
Location Contig152: 611554-612214
Sequence    

Annotation

kegg
ID rcu:RCOM_1500450
description peroxisomal biogenesis factor, putative
nr
ID XP_002510956.1
description peroxisomal biogenesis factor, putative [Ricinus communis]
swissprot
ID Q7XU74
description Peroxisomal membrane protein 11-4 OS=Oryza sativa subsp. japonica GN=PEX11-4 PE=2 SV=2
trembl
ID B9R9T1
description Peroxisomal biogenesis factor, putative OS=Ricinus communis GN=RCOM_1500450 PE=4 SV=1
Gene Ontology
ID GO:0016043
description peroxisomal membrane protein 11b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_750 0.0 - - peroxisomal biogenesis factor, putative [Ricinus communis]
2 Hb_006970_040 0.1323599254 - - PREDICTED: uncharacterized protein LOC105650489 [Jatropha curcas]
3 Hb_137862_010 0.1417905897 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
4 Hb_001242_030 0.144648888 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000227_180 0.1517482721 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Jatropha curcas]
6 Hb_001546_170 0.154266398 - - ankyrin repeat-containing protein, putative [Ricinus communis]
7 Hb_002977_020 0.179737518 - - PREDICTED: glycine-rich cell wall structural protein 1.8-like [Nelumbo nucifera]
8 Hb_100404_010 0.1861261074 - - Cysteine-rich receptor-like protein kinase 29 [Glycine soja]
9 Hb_160045_010 0.1914087836 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001338_130 0.1925177719 - - hypothetical protein MTR_4g129340 [Medicago truncatula]
11 Hb_025325_010 0.1981147472 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
12 Hb_000189_460 0.201411239 - - -
13 Hb_011930_060 0.20571493 - - nitrate transporter, putative [Ricinus communis]
14 Hb_001205_050 0.2081709229 - - -
15 Hb_001021_020 0.211450683 - - hypothetical protein JCGZ_13899 [Jatropha curcas]
16 Hb_002762_020 0.2116511288 - - hypothetical protein VITISV_043202 [Vitis vinifera]
17 Hb_003106_160 0.2125802705 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520 [Jatropha curcas]
18 Hb_006901_020 0.2131529033 - - PREDICTED: guard cell S-type anion channel SLAC1 [Jatropha curcas]
19 Hb_000638_270 0.2157080617 - - -
20 Hb_107373_010 0.2167353316 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_000152_750 Hb_000152_750 Hb_006970_040 Hb_006970_040 Hb_000152_750--Hb_006970_040 Hb_137862_010 Hb_137862_010 Hb_000152_750--Hb_137862_010 Hb_001242_030 Hb_001242_030 Hb_000152_750--Hb_001242_030 Hb_000227_180 Hb_000227_180 Hb_000152_750--Hb_000227_180 Hb_001546_170 Hb_001546_170 Hb_000152_750--Hb_001546_170 Hb_002977_020 Hb_002977_020 Hb_000152_750--Hb_002977_020 Hb_006970_040--Hb_137862_010 Hb_006970_040--Hb_001546_170 Hb_011930_060 Hb_011930_060 Hb_006970_040--Hb_011930_060 Hb_002641_020 Hb_002641_020 Hb_006970_040--Hb_002641_020 Hb_006970_040--Hb_000227_180 Hb_140465_010 Hb_140465_010 Hb_137862_010--Hb_140465_010 Hb_000731_120 Hb_000731_120 Hb_137862_010--Hb_000731_120 Hb_137862_010--Hb_002641_020 Hb_137862_010--Hb_001242_030 Hb_001242_030--Hb_002977_020 Hb_001242_030--Hb_001546_170 Hb_001242_030--Hb_000227_180 Hb_000189_460 Hb_000189_460 Hb_001242_030--Hb_000189_460 Hb_001338_130 Hb_001338_130 Hb_001242_030--Hb_001338_130 Hb_001242_030--Hb_011930_060 Hb_000227_180--Hb_001546_170 Hb_025325_010 Hb_025325_010 Hb_000227_180--Hb_025325_010 Hb_000227_180--Hb_001338_130 Hb_160045_010 Hb_160045_010 Hb_000227_180--Hb_160045_010 Hb_006901_020 Hb_006901_020 Hb_000227_180--Hb_006901_020 Hb_001546_170--Hb_001338_130 Hb_001546_170--Hb_011930_060 Hb_001546_170--Hb_025325_010 Hb_107373_010 Hb_107373_010 Hb_001546_170--Hb_107373_010 Hb_002977_020--Hb_000189_460 Hb_001021_020 Hb_001021_020 Hb_002977_020--Hb_001021_020 Hb_002977_020--Hb_011930_060 Hb_011900_030 Hb_011900_030 Hb_002977_020--Hb_011900_030 Hb_100404_010 Hb_100404_010 Hb_002977_020--Hb_100404_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.123855 0.67426 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0830597 0 0 1.27948

CAGE analysis