Hb_006970_040

Information

Type -
Description -
Location Contig6970: 57067-65003
Sequence    

Annotation

kegg
ID rcu:RCOM_1576930
description hypothetical protein
nr
ID XP_012092794.1
description PREDICTED: uncharacterized protein LOC105650489 [Jatropha curcas]
swissprot
ID B2HIM0
description Long-chain-fatty-acid--AMP ligase FadD28 OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=fadD28 PE=3 SV=1
trembl
ID B9RI78
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1576930 PE=4 SV=1
Gene Ontology
ID GO:0004096
description long-chain-fatty-acid--amp ligase 28

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006970_040 0.0 - - PREDICTED: uncharacterized protein LOC105650489 [Jatropha curcas]
2 Hb_000152_750 0.1323599254 - - peroxisomal biogenesis factor, putative [Ricinus communis]
3 Hb_137862_010 0.1548067029 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
4 Hb_001546_170 0.1678798509 - - ankyrin repeat-containing protein, putative [Ricinus communis]
5 Hb_011930_060 0.1689028068 - - nitrate transporter, putative [Ricinus communis]
6 Hb_002641_020 0.1714765765 - - 3'-5' exonuclease, putative [Ricinus communis]
7 Hb_000227_180 0.1759258491 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Jatropha curcas]
8 Hb_000334_010 0.1769842842 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
9 Hb_000834_170 0.1777118861 - - polygalacturonase, putative [Ricinus communis]
10 Hb_033312_120 0.1797096636 - - PREDICTED: psbQ-like protein 3, chloroplastic [Jatropha curcas]
11 Hb_001604_100 0.1857245815 - - PREDICTED: putative serine/threonine-protein kinase isoform X3 [Jatropha curcas]
12 Hb_002977_020 0.1858005604 - - PREDICTED: glycine-rich cell wall structural protein 1.8-like [Nelumbo nucifera]
13 Hb_002025_220 0.1869631224 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
14 Hb_000307_150 0.1892910741 - - PREDICTED: thioredoxin-like protein CDSP32, chloroplastic [Jatropha curcas]
15 Hb_000189_460 0.1947925156 - - -
16 Hb_001021_020 0.1965641898 - - hypothetical protein JCGZ_13899 [Jatropha curcas]
17 Hb_000638_270 0.1977337371 - - -
18 Hb_001338_130 0.1980424132 - - hypothetical protein MTR_4g129340 [Medicago truncatula]
19 Hb_001242_030 0.1990495574 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001102_130 0.2007684532 transcription factor TF Family: PHD PREDICTED: protein Jade-1 [Populus euphratica]

Gene co-expression network

sample Hb_006970_040 Hb_006970_040 Hb_000152_750 Hb_000152_750 Hb_006970_040--Hb_000152_750 Hb_137862_010 Hb_137862_010 Hb_006970_040--Hb_137862_010 Hb_001546_170 Hb_001546_170 Hb_006970_040--Hb_001546_170 Hb_011930_060 Hb_011930_060 Hb_006970_040--Hb_011930_060 Hb_002641_020 Hb_002641_020 Hb_006970_040--Hb_002641_020 Hb_000227_180 Hb_000227_180 Hb_006970_040--Hb_000227_180 Hb_000152_750--Hb_137862_010 Hb_001242_030 Hb_001242_030 Hb_000152_750--Hb_001242_030 Hb_000152_750--Hb_000227_180 Hb_000152_750--Hb_001546_170 Hb_002977_020 Hb_002977_020 Hb_000152_750--Hb_002977_020 Hb_140465_010 Hb_140465_010 Hb_137862_010--Hb_140465_010 Hb_000731_120 Hb_000731_120 Hb_137862_010--Hb_000731_120 Hb_137862_010--Hb_002641_020 Hb_137862_010--Hb_001242_030 Hb_001546_170--Hb_000227_180 Hb_001546_170--Hb_001242_030 Hb_001338_130 Hb_001338_130 Hb_001546_170--Hb_001338_130 Hb_001546_170--Hb_011930_060 Hb_025325_010 Hb_025325_010 Hb_001546_170--Hb_025325_010 Hb_107373_010 Hb_107373_010 Hb_001546_170--Hb_107373_010 Hb_000834_170 Hb_000834_170 Hb_011930_060--Hb_000834_170 Hb_002025_220 Hb_002025_220 Hb_011930_060--Hb_002025_220 Hb_005305_140 Hb_005305_140 Hb_011930_060--Hb_005305_140 Hb_000115_020 Hb_000115_020 Hb_011930_060--Hb_000115_020 Hb_011930_060--Hb_001338_130 Hb_011930_060--Hb_107373_010 Hb_000184_010 Hb_000184_010 Hb_002641_020--Hb_000184_010 Hb_000510_180 Hb_000510_180 Hb_002641_020--Hb_000510_180 Hb_001102_130 Hb_001102_130 Hb_002641_020--Hb_001102_130 Hb_001488_250 Hb_001488_250 Hb_002641_020--Hb_001488_250 Hb_001662_090 Hb_001662_090 Hb_002641_020--Hb_001662_090 Hb_001864_050 Hb_001864_050 Hb_002641_020--Hb_001864_050 Hb_000227_180--Hb_025325_010 Hb_000227_180--Hb_001338_130 Hb_000227_180--Hb_001242_030 Hb_160045_010 Hb_160045_010 Hb_000227_180--Hb_160045_010 Hb_006901_020 Hb_006901_020 Hb_000227_180--Hb_006901_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0103674 0.0341088 0.00189959 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00468319 0 0 0.0504732

CAGE analysis