Hb_000731_120

Information

Type -
Description -
Location Contig731: 124905-127955
Sequence    

Annotation

kegg
ID rcu:RCOM_0175560
description Beta-glucosidase, putative (EC:3.2.1.21)
nr
ID XP_002527511.1
description Beta-glucosidase, putative [Ricinus communis]
swissprot
ID Q9LJN4
description Probable beta-D-xylosidase 5 OS=Arabidopsis thaliana GN=BXL5 PE=2 SV=2
trembl
ID B9SNE2
description Beta-glucosidase, putative OS=Ricinus communis GN=RCOM_0175560 PE=4 SV=1
Gene Ontology
ID GO:0005618
description probable beta-d-xylosidase 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55973: 125071-126043
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000731_120 0.0 - - Beta-glucosidase, putative [Ricinus communis]
2 Hb_137862_010 0.2200412244 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
3 Hb_024404_040 0.2383904843 - - hypothetical protein JCGZ_22351 [Jatropha curcas]
4 Hb_000152_750 0.2407592093 - - peroxisomal biogenesis factor, putative [Ricinus communis]
5 Hb_130507_020 0.24776571 - - -
6 Hb_001951_160 0.2553989011 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
7 Hb_004511_060 0.2559853736 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103328625 [Prunus mume]
8 Hb_007908_010 0.2601356093 - - -
9 Hb_093912_010 0.2603232022 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
10 Hb_113541_010 0.2666249465 - - PREDICTED: uncharacterized protein LOC105762713 [Gossypium raimondii]
11 Hb_007970_040 0.2679542506 - - PREDICTED: uncharacterized protein LOC104587672 [Nelumbo nucifera]
12 Hb_006970_040 0.2717025917 - - PREDICTED: uncharacterized protein LOC105650489 [Jatropha curcas]
13 Hb_000031_200 0.2812617405 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM3-like [Jatropha curcas]
14 Hb_003540_170 0.281904515 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial-like [Jatropha curcas]
15 Hb_000668_210 0.2857548205 - - hypothetical protein PHAVU_006G031500g [Phaseolus vulgaris]
16 Hb_008918_030 0.2862812647 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
17 Hb_012753_070 0.289220259 - - hypothetical protein VITISV_033646 [Vitis vinifera]
18 Hb_073467_010 0.2906733421 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
19 Hb_004924_040 0.2913636974 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
20 Hb_003058_160 0.2914219471 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000731_120 Hb_000731_120 Hb_137862_010 Hb_137862_010 Hb_000731_120--Hb_137862_010 Hb_024404_040 Hb_024404_040 Hb_000731_120--Hb_024404_040 Hb_000152_750 Hb_000152_750 Hb_000731_120--Hb_000152_750 Hb_130507_020 Hb_130507_020 Hb_000731_120--Hb_130507_020 Hb_001951_160 Hb_001951_160 Hb_000731_120--Hb_001951_160 Hb_004511_060 Hb_004511_060 Hb_000731_120--Hb_004511_060 Hb_137862_010--Hb_000152_750 Hb_006970_040 Hb_006970_040 Hb_137862_010--Hb_006970_040 Hb_140465_010 Hb_140465_010 Hb_137862_010--Hb_140465_010 Hb_002641_020 Hb_002641_020 Hb_137862_010--Hb_002641_020 Hb_001242_030 Hb_001242_030 Hb_137862_010--Hb_001242_030 Hb_024404_040--Hb_001951_160 Hb_001623_120 Hb_001623_120 Hb_024404_040--Hb_001623_120 Hb_024404_040--Hb_130507_020 Hb_000788_140 Hb_000788_140 Hb_024404_040--Hb_000788_140 Hb_007908_010 Hb_007908_010 Hb_024404_040--Hb_007908_010 Hb_000152_750--Hb_006970_040 Hb_000152_750--Hb_001242_030 Hb_000227_180 Hb_000227_180 Hb_000152_750--Hb_000227_180 Hb_001546_170 Hb_001546_170 Hb_000152_750--Hb_001546_170 Hb_002977_020 Hb_002977_020 Hb_000152_750--Hb_002977_020 Hb_000668_210 Hb_000668_210 Hb_130507_020--Hb_000668_210 Hb_130507_020--Hb_007908_010 Hb_130507_020--Hb_001951_160 Hb_000922_210 Hb_000922_210 Hb_130507_020--Hb_000922_210 Hb_002217_290 Hb_002217_290 Hb_130507_020--Hb_002217_290 Hb_001951_160--Hb_001623_120 Hb_001951_160--Hb_000788_140 Hb_001951_160--Hb_007908_010 Hb_001951_160--Hb_000922_210 Hb_093912_010 Hb_093912_010 Hb_004511_060--Hb_093912_010 Hb_113541_010 Hb_113541_010 Hb_004511_060--Hb_113541_010 Hb_007970_040 Hb_007970_040 Hb_004511_060--Hb_007970_040 Hb_162086_010 Hb_162086_010 Hb_004511_060--Hb_162086_010 Hb_000976_200 Hb_000976_200 Hb_004511_060--Hb_000976_200 Hb_111854_010 Hb_111854_010 Hb_004511_060--Hb_111854_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00766687 0.0114753 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.013831 0 0 0.0588051

CAGE analysis