Hb_137862_010

Information

Type transcription factor
Description TF Family: NAC
Location Contig137862: 5684-7044
Sequence    

Annotation

kegg
ID rcu:RCOM_0674920
description NAC domain-containing protein, putative
nr
ID XP_002521498.1
description NAC domain-containing protein, putative [Ricinus communis]
swissprot
ID Q9MA17
description Protein SOMBRERO OS=Arabidopsis thaliana GN=SMB PE=1 SV=1
trembl
ID B9S679
description NAC domain-containing protein, putative OS=Ricinus communis GN=RCOM_0674920 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein sombrero-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_137862_010 0.0 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
2 Hb_000152_750 0.1417905897 - - peroxisomal biogenesis factor, putative [Ricinus communis]
3 Hb_006970_040 0.1548067029 - - PREDICTED: uncharacterized protein LOC105650489 [Jatropha curcas]
4 Hb_140465_010 0.2051649533 - - PREDICTED: MLP-like protein 423 [Jatropha curcas]
5 Hb_000731_120 0.2200412244 - - Beta-glucosidase, putative [Ricinus communis]
6 Hb_002641_020 0.2406458058 - - 3'-5' exonuclease, putative [Ricinus communis]
7 Hb_001242_030 0.2497514857 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002762_030 0.2510638369 - - hypothetical protein POPTR_0019s12370g, partial [Populus trichocarpa]
9 Hb_002977_020 0.2534238479 - - PREDICTED: glycine-rich cell wall structural protein 1.8-like [Nelumbo nucifera]
10 Hb_001546_170 0.2542273553 - - ankyrin repeat-containing protein, putative [Ricinus communis]
11 Hb_000525_070 0.2604521741 - - PREDICTED: WAT1-related protein At5g40240-like [Jatropha curcas]
12 Hb_000189_460 0.2607640132 - - -
13 Hb_000227_180 0.2618684483 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Jatropha curcas]
14 Hb_001969_100 0.2662545932 - - signal transducer, putative [Ricinus communis]
15 Hb_003026_040 0.2667653616 - - Uncharacterized protein TCM_007861 [Theobroma cacao]
16 Hb_001021_020 0.2670211417 - - hypothetical protein JCGZ_13899 [Jatropha curcas]
17 Hb_033312_120 0.2721406111 - - PREDICTED: psbQ-like protein 3, chloroplastic [Jatropha curcas]
18 Hb_011930_060 0.2733572643 - - nitrate transporter, putative [Ricinus communis]
19 Hb_002762_020 0.2757427087 - - hypothetical protein VITISV_043202 [Vitis vinifera]
20 Hb_011900_030 0.2765011179 - - hypothetical protein JCGZ_13686 [Jatropha curcas]

Gene co-expression network

sample Hb_137862_010 Hb_137862_010 Hb_000152_750 Hb_000152_750 Hb_137862_010--Hb_000152_750 Hb_006970_040 Hb_006970_040 Hb_137862_010--Hb_006970_040 Hb_140465_010 Hb_140465_010 Hb_137862_010--Hb_140465_010 Hb_000731_120 Hb_000731_120 Hb_137862_010--Hb_000731_120 Hb_002641_020 Hb_002641_020 Hb_137862_010--Hb_002641_020 Hb_001242_030 Hb_001242_030 Hb_137862_010--Hb_001242_030 Hb_000152_750--Hb_006970_040 Hb_000152_750--Hb_001242_030 Hb_000227_180 Hb_000227_180 Hb_000152_750--Hb_000227_180 Hb_001546_170 Hb_001546_170 Hb_000152_750--Hb_001546_170 Hb_002977_020 Hb_002977_020 Hb_000152_750--Hb_002977_020 Hb_006970_040--Hb_001546_170 Hb_011930_060 Hb_011930_060 Hb_006970_040--Hb_011930_060 Hb_006970_040--Hb_002641_020 Hb_006970_040--Hb_000227_180 Hb_140465_010--Hb_006970_040 Hb_033312_120 Hb_033312_120 Hb_140465_010--Hb_033312_120 Hb_000803_160 Hb_000803_160 Hb_140465_010--Hb_000803_160 Hb_001021_020 Hb_001021_020 Hb_140465_010--Hb_001021_020 Hb_000189_460 Hb_000189_460 Hb_140465_010--Hb_000189_460 Hb_024404_040 Hb_024404_040 Hb_000731_120--Hb_024404_040 Hb_000731_120--Hb_000152_750 Hb_130507_020 Hb_130507_020 Hb_000731_120--Hb_130507_020 Hb_001951_160 Hb_001951_160 Hb_000731_120--Hb_001951_160 Hb_004511_060 Hb_004511_060 Hb_000731_120--Hb_004511_060 Hb_000184_010 Hb_000184_010 Hb_002641_020--Hb_000184_010 Hb_000510_180 Hb_000510_180 Hb_002641_020--Hb_000510_180 Hb_001102_130 Hb_001102_130 Hb_002641_020--Hb_001102_130 Hb_001488_250 Hb_001488_250 Hb_002641_020--Hb_001488_250 Hb_001662_090 Hb_001662_090 Hb_002641_020--Hb_001662_090 Hb_001864_050 Hb_001864_050 Hb_002641_020--Hb_001864_050 Hb_001242_030--Hb_002977_020 Hb_001242_030--Hb_001546_170 Hb_001242_030--Hb_000227_180 Hb_001242_030--Hb_000189_460 Hb_001338_130 Hb_001338_130 Hb_001242_030--Hb_001338_130 Hb_001242_030--Hb_011930_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0234589 0.122578 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0421101 0 0 0.171734

CAGE analysis