Hb_007908_010

Information

Type -
Description -
Location Contig7908: 34906-42772
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58352: 34843-35597 , PASA_asmbl_58353: 35808-36169
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007908_010 0.0 - - -
2 Hb_000474_020 0.1340612102 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
3 Hb_003683_100 0.1342701281 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_007924_040 0.1343878955 - - PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 [Populus euphratica]
5 Hb_001072_060 0.1352036713 - - PREDICTED: uncharacterized protein LOC105645525 [Jatropha curcas]
6 Hb_035484_010 0.1458002383 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
7 Hb_130507_020 0.1673008785 - - -
8 Hb_000668_210 0.1864925052 - - hypothetical protein PHAVU_006G031500g [Phaseolus vulgaris]
9 Hb_029154_020 0.1949470531 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_029793_020 0.1950351764 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
11 Hb_002223_010 0.1953305013 - - hypothetical protein VITISV_009489 [Vitis vinifera]
12 Hb_004337_010 0.1953411098 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_003207_140 0.1974181113 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
14 Hb_000676_210 0.1976300892 - - Cytochrome P450 superfamily protein [Theobroma cacao]
15 Hb_024404_040 0.1996718786 - - hypothetical protein JCGZ_22351 [Jatropha curcas]
16 Hb_004730_030 0.1998357463 - - synaptonemal complex protein, putative [Ricinus communis]
17 Hb_002431_070 0.2000303803 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA11 [Jatropha curcas]
18 Hb_085438_010 0.2000978288 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
19 Hb_108331_010 0.203848011 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
20 Hb_163434_010 0.2057494038 - - hypothetical protein JCGZ_13470 [Jatropha curcas]

Gene co-expression network

sample Hb_007908_010 Hb_007908_010 Hb_000474_020 Hb_000474_020 Hb_007908_010--Hb_000474_020 Hb_003683_100 Hb_003683_100 Hb_007908_010--Hb_003683_100 Hb_007924_040 Hb_007924_040 Hb_007908_010--Hb_007924_040 Hb_001072_060 Hb_001072_060 Hb_007908_010--Hb_001072_060 Hb_035484_010 Hb_035484_010 Hb_007908_010--Hb_035484_010 Hb_130507_020 Hb_130507_020 Hb_007908_010--Hb_130507_020 Hb_000474_020--Hb_003683_100 Hb_000474_020--Hb_007924_040 Hb_000474_020--Hb_001072_060 Hb_000474_020--Hb_035484_010 Hb_029154_020 Hb_029154_020 Hb_000474_020--Hb_029154_020 Hb_029793_020 Hb_029793_020 Hb_000474_020--Hb_029793_020 Hb_003683_100--Hb_007924_040 Hb_003683_100--Hb_001072_060 Hb_003683_100--Hb_035484_010 Hb_003683_100--Hb_029154_020 Hb_003683_100--Hb_029793_020 Hb_007924_040--Hb_001072_060 Hb_007924_040--Hb_035484_010 Hb_007924_040--Hb_029154_020 Hb_007924_040--Hb_029793_020 Hb_001072_060--Hb_035484_010 Hb_001072_060--Hb_029154_020 Hb_001072_060--Hb_029793_020 Hb_035484_010--Hb_029154_020 Hb_035484_010--Hb_029793_020 Hb_000668_210 Hb_000668_210 Hb_130507_020--Hb_000668_210 Hb_024404_040 Hb_024404_040 Hb_130507_020--Hb_024404_040 Hb_001951_160 Hb_001951_160 Hb_130507_020--Hb_001951_160 Hb_000922_210 Hb_000922_210 Hb_130507_020--Hb_000922_210 Hb_002217_290 Hb_002217_290 Hb_130507_020--Hb_002217_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0379354 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.181647 0 0 0.865365

CAGE analysis