Hb_006970_010

Information

Type -
Description -
Location Contig6970: 10099-15815
Sequence    

Annotation

kegg
ID rcu:RCOM_1576890
description lipoxygenase, putative (EC:1.13.11.12)
nr
ID XP_002513443.1
description lipoxygenase, putative [Ricinus communis]
swissprot
ID O24370
description Linoleate 13S-lipoxygenase 2-1, chloroplastic OS=Solanum tuberosum GN=LOX2.1 PE=1 SV=1
trembl
ID B9RI74
description Lipoxygenase OS=Ricinus communis GN=RCOM_1576890 PE=3 SV=1
Gene Ontology
ID GO:0016702
description linoleate 13s-lipoxygenase 2- chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54634: 10113-15815 , PASA_asmbl_54635: 14925-15684 , PASA_asmbl_54636: 15186-15684
cDNA
(Sanger)
(ID:Location)		 014_E08.ab1: 13447-15815 , 035_M18.ab1: 13337-15815 , 049_G19.ab1: 14993-15815

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006970_010 0.0 - - lipoxygenase, putative [Ricinus communis]
2 Hb_000914_190 0.1551782573 - - xanthine dehydrogenase, putative [Ricinus communis]
3 Hb_139365_010 0.159131626 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
4 Hb_027654_010 0.1613680774 - - Isoamyl acetate-hydrolyzing esterase, putative [Ricinus communis]
5 Hb_015817_010 0.1693868027 - - PREDICTED: putative receptor protein kinase ZmPK1 [Jatropha curcas]
6 Hb_004242_200 0.1705522286 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s44130g [Populus trichocarpa]
7 Hb_001699_020 0.1708768837 - - hypothetical protein L484_026849 [Morus notabilis]
8 Hb_001377_210 0.1774201948 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
9 Hb_010381_080 0.1791588811 - - cytochrome P450, putative [Ricinus communis]
10 Hb_003171_040 0.1806983166 - - multidrug resistance pump, putative [Ricinus communis]
11 Hb_006147_020 0.1818115252 - - conserved hypothetical protein [Ricinus communis]
12 Hb_043935_010 0.1818743974 - - Receptor protein kinase-like protein [Medicago truncatula]
13 Hb_005029_030 0.1822020709 - - PREDICTED: LOW QUALITY PROTEIN: 36.4 kDa proline-rich protein-like [Sesamum indicum]
14 Hb_000476_030 0.1885948631 - - PREDICTED: uncharacterized protein LOC105629366 [Jatropha curcas]
15 Hb_080791_010 0.1889982021 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
16 Hb_000018_130 0.1899528059 - - PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]
17 Hb_001300_240 0.1905495071 - - shikimate dehydrogenase, putative [Ricinus communis]
18 Hb_154430_010 0.1914544534 - - PREDICTED: uncharacterized protein LOC105637632 isoform X2 [Jatropha curcas]
19 Hb_170878_020 0.1932213315 - - -
20 Hb_002876_100 0.1952619658 - - hypothetical protein POPTR_0019s11600g [Populus trichocarpa]

Gene co-expression network

sample Hb_006970_010 Hb_006970_010 Hb_000914_190 Hb_000914_190 Hb_006970_010--Hb_000914_190 Hb_139365_010 Hb_139365_010 Hb_006970_010--Hb_139365_010 Hb_027654_010 Hb_027654_010 Hb_006970_010--Hb_027654_010 Hb_015817_010 Hb_015817_010 Hb_006970_010--Hb_015817_010 Hb_004242_200 Hb_004242_200 Hb_006970_010--Hb_004242_200 Hb_001699_020 Hb_001699_020 Hb_006970_010--Hb_001699_020 Hb_001377_210 Hb_001377_210 Hb_000914_190--Hb_001377_210 Hb_000092_060 Hb_000092_060 Hb_000914_190--Hb_000092_060 Hb_000914_190--Hb_004242_200 Hb_015978_090 Hb_015978_090 Hb_000914_190--Hb_015978_090 Hb_006915_010 Hb_006915_010 Hb_000914_190--Hb_006915_010 Hb_000011_440 Hb_000011_440 Hb_000914_190--Hb_000011_440 Hb_003171_040 Hb_003171_040 Hb_139365_010--Hb_003171_040 Hb_168319_040 Hb_168319_040 Hb_139365_010--Hb_168319_040 Hb_000858_050 Hb_000858_050 Hb_139365_010--Hb_000858_050 Hb_015807_020 Hb_015807_020 Hb_139365_010--Hb_015807_020 Hb_001579_050 Hb_001579_050 Hb_139365_010--Hb_001579_050 Hb_004146_030 Hb_004146_030 Hb_139365_010--Hb_004146_030 Hb_027654_010--Hb_015817_010 Hb_043935_010 Hb_043935_010 Hb_027654_010--Hb_043935_010 Hb_010381_080 Hb_010381_080 Hb_027654_010--Hb_010381_080 Hb_006147_020 Hb_006147_020 Hb_027654_010--Hb_006147_020 Hb_004392_030 Hb_004392_030 Hb_027654_010--Hb_004392_030 Hb_027654_010--Hb_001699_020 Hb_015817_010--Hb_043935_010 Hb_080791_010 Hb_080791_010 Hb_015817_010--Hb_080791_010 Hb_015817_010--Hb_006147_020 Hb_005029_030 Hb_005029_030 Hb_015817_010--Hb_005029_030 Hb_000026_060 Hb_000026_060 Hb_015817_010--Hb_000026_060 Hb_004459_050 Hb_004459_050 Hb_015817_010--Hb_004459_050 Hb_004242_200--Hb_010381_080 Hb_001300_240 Hb_001300_240 Hb_004242_200--Hb_001300_240 Hb_114893_010 Hb_114893_010 Hb_004242_200--Hb_114893_010 Hb_004242_200--Hb_006147_020 Hb_004242_200--Hb_043935_010 Hb_004242_200--Hb_004146_030 Hb_002876_100 Hb_002876_100 Hb_001699_020--Hb_002876_100 Hb_003462_170 Hb_003462_170 Hb_001699_020--Hb_003462_170 Hb_007632_140 Hb_007632_140 Hb_001699_020--Hb_007632_140 Hb_019135_010 Hb_019135_010 Hb_001699_020--Hb_019135_010 Hb_001699_020--Hb_015817_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.644475 0.486621 18.9127 6.14779 0.00606419 0.250818
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.778828 0.370039 3.80395 15.1135 86.9013

CAGE analysis