Hb_139365_010

Information

Type -
Description -
Location Contig139365: 2657-6825
Sequence    

Annotation

kegg
ID cit:102619650
description LRR receptor-like serine/threonine-protein kinase GSO2-like
nr
ID XP_012081236.1
description PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
swissprot
ID C0LGQ5
description LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1
trembl
ID A0A067DCZ9
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001036mg PE=4 SV=1
Gene Ontology
ID GO:0005515
description lrr receptor-like serine threonine-protein kinase gso2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_139365_010 0.0 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
2 Hb_003171_040 0.1105170402 - - multidrug resistance pump, putative [Ricinus communis]
3 Hb_168319_040 0.1151768056 - - PREDICTED: cytochrome P450 CYP749A22-like [Jatropha curcas]
4 Hb_000858_050 0.1188349121 - - kinase, putative [Ricinus communis]
5 Hb_015807_020 0.1249710039 - - gibberellin 20-oxidase, putative [Ricinus communis]
6 Hb_001579_050 0.1270666569 - - alcohol dehydrogenase, putative [Ricinus communis]
7 Hb_004146_030 0.1284573734 - - UDP-glucosyltransferase, putative [Ricinus communis]
8 Hb_000026_060 0.1357291647 - - beta-1,3-glucanase [Manihot esculenta]
9 Hb_077151_010 0.1385512254 - - ankyrin repeat protein [Bruguiera gymnorhiza]
10 Hb_000282_100 0.142411854 - - PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]
11 Hb_001289_050 0.1444970233 - - hypothetical protein Poptr_cp075 [Populus trichocarpa]
12 Hb_001135_190 0.1446629936 transcription factor TF Family: Orphans Pseudo response regulator isoform 11 [Theobroma cacao]
13 Hb_001517_060 0.1448091175 - - phosphoribulose kinase, putative [Ricinus communis]
14 Hb_010080_070 0.1454097207 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH, chloroplastic [Jatropha curcas]
15 Hb_001691_170 0.1457456698 - - PREDICTED: callose synthase 12-like [Glycine max]
16 Hb_028960_010 0.1463657935 - - phosphoglycerate kinase, putative [Ricinus communis]
17 Hb_007426_070 0.1471750857 - - PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase [Jatropha curcas]
18 Hb_009093_020 0.1490434229 - - PREDICTED: uncharacterized protein LOC105642100 [Jatropha curcas]
19 Hb_080791_010 0.1493127638 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
20 Hb_000135_080 0.1507699384 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]

Gene co-expression network

sample Hb_139365_010 Hb_139365_010 Hb_003171_040 Hb_003171_040 Hb_139365_010--Hb_003171_040 Hb_168319_040 Hb_168319_040 Hb_139365_010--Hb_168319_040 Hb_000858_050 Hb_000858_050 Hb_139365_010--Hb_000858_050 Hb_015807_020 Hb_015807_020 Hb_139365_010--Hb_015807_020 Hb_001579_050 Hb_001579_050 Hb_139365_010--Hb_001579_050 Hb_004146_030 Hb_004146_030 Hb_139365_010--Hb_004146_030 Hb_000026_060 Hb_000026_060 Hb_003171_040--Hb_000026_060 Hb_003171_040--Hb_004146_030 Hb_123689_010 Hb_123689_010 Hb_003171_040--Hb_123689_010 Hb_003171_040--Hb_001579_050 Hb_004242_200 Hb_004242_200 Hb_003171_040--Hb_004242_200 Hb_001691_180 Hb_001691_180 Hb_003171_040--Hb_001691_180 Hb_000441_080 Hb_000441_080 Hb_168319_040--Hb_000441_080 Hb_077151_010 Hb_077151_010 Hb_168319_040--Hb_077151_010 Hb_168319_040--Hb_001579_050 Hb_001691_170 Hb_001691_170 Hb_168319_040--Hb_001691_170 Hb_168319_040--Hb_000858_050 Hb_005678_030 Hb_005678_030 Hb_168319_040--Hb_005678_030 Hb_000858_050--Hb_015807_020 Hb_000282_100 Hb_000282_100 Hb_000858_050--Hb_000282_100 Hb_000858_050--Hb_000026_060 Hb_000858_050--Hb_004146_030 Hb_005029_030 Hb_005029_030 Hb_000858_050--Hb_005029_030 Hb_001289_050 Hb_001289_050 Hb_000858_050--Hb_001289_050 Hb_015807_020--Hb_001579_050 Hb_015807_020--Hb_001289_050 Hb_004459_050 Hb_004459_050 Hb_015807_020--Hb_004459_050 Hb_015807_020--Hb_077151_010 Hb_015807_020--Hb_000282_100 Hb_001517_060 Hb_001517_060 Hb_001579_050--Hb_001517_060 Hb_001579_050--Hb_001289_050 Hb_000139_030 Hb_000139_030 Hb_001579_050--Hb_000139_030 Hb_000081_110 Hb_000081_110 Hb_001579_050--Hb_000081_110 Hb_002534_090 Hb_002534_090 Hb_001579_050--Hb_002534_090 Hb_007426_070 Hb_007426_070 Hb_004146_030--Hb_007426_070 Hb_004146_030--Hb_000026_060 Hb_000017_210 Hb_000017_210 Hb_004146_030--Hb_000017_210 Hb_000483_440 Hb_000483_440 Hb_004146_030--Hb_000483_440 Hb_004146_030--Hb_001579_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0142843 0.0639444 0.396927 0.138822 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0480481 0.112504 1.87232

CAGE analysis