Hb_002876_100

Information

Type -
Description -
Location Contig2876: 80128-82190
Sequence    

Annotation

kegg
ID pop:POPTR_0019s11600g
description POPTRDRAFT_249770; hypothetical protein
nr
ID XP_002326006.2
description hypothetical protein POPTR_0019s11600g [Populus trichocarpa]
swissprot
ID Q8RWF5
description MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1
trembl
ID B9IQL5
description MATE efflux family protein OS=Populus trichocarpa GN=POPTR_0019s11600g PE=3 SV=2
Gene Ontology
ID GO:0016021
description mate efflux family protein 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002876_100 0.0 - - hypothetical protein POPTR_0019s11600g [Populus trichocarpa]
2 Hb_001699_020 0.0864738407 - - hypothetical protein L484_026849 [Morus notabilis]
3 Hb_002121_070 0.113322271 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005714_120 0.1137937779 - - nucleic acid binding protein, putative [Ricinus communis]
5 Hb_000362_100 0.1212747517 - - -
6 Hb_005021_040 0.1220328788 - - PREDICTED: uncharacterized protein LOC103848240 [Brassica rapa]
7 Hb_036731_010 0.1235708017 - - -
8 Hb_007632_140 0.1325340584 - - -
9 Hb_166210_010 0.1331221448 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002188_050 0.1405044017 - - PREDICTED: serine carboxypeptidase-like 2 [Jatropha curcas]
11 Hb_019135_010 0.1420387226 - - -
12 Hb_006415_010 0.1458755366 - - -
13 Hb_001514_140 0.1585444843 - - -
14 Hb_043960_010 0.159645331 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_027654_010 0.1598931044 - - Isoamyl acetate-hydrolyzing esterase, putative [Ricinus communis]
16 Hb_004487_060 0.1603474759 - - cytochrome P450, putative [Ricinus communis]
17 Hb_000906_120 0.1650587194 - - hypothetical protein VITISV_006406 [Vitis vinifera]
18 Hb_004392_030 0.165946567 - - oxidoreductase family protein [Populus trichocarpa]
19 Hb_018746_010 0.1666373237 - - PREDICTED: uncharacterized protein LOC105629982 [Jatropha curcas]
20 Hb_006147_020 0.1709528425 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002876_100 Hb_002876_100 Hb_001699_020 Hb_001699_020 Hb_002876_100--Hb_001699_020 Hb_002121_070 Hb_002121_070 Hb_002876_100--Hb_002121_070 Hb_005714_120 Hb_005714_120 Hb_002876_100--Hb_005714_120 Hb_000362_100 Hb_000362_100 Hb_002876_100--Hb_000362_100 Hb_005021_040 Hb_005021_040 Hb_002876_100--Hb_005021_040 Hb_036731_010 Hb_036731_010 Hb_002876_100--Hb_036731_010 Hb_003462_170 Hb_003462_170 Hb_001699_020--Hb_003462_170 Hb_007632_140 Hb_007632_140 Hb_001699_020--Hb_007632_140 Hb_027654_010 Hb_027654_010 Hb_001699_020--Hb_027654_010 Hb_019135_010 Hb_019135_010 Hb_001699_020--Hb_019135_010 Hb_015817_010 Hb_015817_010 Hb_001699_020--Hb_015817_010 Hb_002121_070--Hb_000362_100 Hb_002121_070--Hb_005714_120 Hb_002121_070--Hb_007632_140 Hb_002121_070--Hb_036731_010 Hb_002121_070--Hb_019135_010 Hb_166210_010 Hb_166210_010 Hb_002121_070--Hb_166210_010 Hb_005714_120--Hb_036731_010 Hb_005714_120--Hb_166210_010 Hb_005714_120--Hb_000362_100 Hb_001514_140 Hb_001514_140 Hb_005714_120--Hb_001514_140 Hb_005714_120--Hb_005021_040 Hb_000362_100--Hb_007632_140 Hb_000362_100--Hb_019135_010 Hb_000362_100--Hb_036731_010 Hb_043960_010 Hb_043960_010 Hb_000362_100--Hb_043960_010 Hb_002188_050 Hb_002188_050 Hb_005021_040--Hb_002188_050 Hb_006415_010 Hb_006415_010 Hb_005021_040--Hb_006415_010 Hb_000906_120 Hb_000906_120 Hb_005021_040--Hb_000906_120 Hb_005021_040--Hb_002121_070 Hb_005021_040--Hb_000362_100 Hb_036731_010--Hb_166210_010 Hb_036731_010--Hb_001514_140 Hb_018746_010 Hb_018746_010 Hb_036731_010--Hb_018746_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0727018 0.00984521 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0864496 0.251966

CAGE analysis