Hb_126044_010

Information

Type -
Description -
Location Contig126044: 20-1186
Sequence    

Annotation

kegg
ID pda:103723366
description uncharacterized LOC103723366
nr
ID XP_012068505.1
description PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A5APH1
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_044466 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_126044_010 0.0 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
2 Hb_007064_030 0.1436358023 - - polyprotein [Citrus endogenous pararetrovirus]
3 Hb_057207_010 0.2280137441 - - hypothetical protein F383_17010 [Gossypium arboreum]
4 Hb_071130_040 0.2646444722 - - conserved hypothetical protein [Ricinus communis]
5 Hb_124621_010 0.3172302915 - - hypothetical protein L484_019698 [Morus notabilis]
6 Hb_001335_050 0.3241028024 - - -
7 Hb_006212_030 0.3245444452 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
8 Hb_004656_080 0.325172285 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_003927_060 0.339014366 - - hypothetical protein JCGZ_05636 [Jatropha curcas]
10 Hb_107221_010 0.3438351344 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_012938_010 0.3492540484 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_005654_010 0.3638171673 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_000016_120 0.3704700006 - - PREDICTED: uncharacterized protein LOC104610208 [Nelumbo nucifera]
14 Hb_020378_050 0.3719639943 - - -
15 Hb_000375_180 0.3726862874 - - PREDICTED: uncharacterized protein LOC104593656 [Nelumbo nucifera]
16 Hb_011724_030 0.3730432043 - - Organic cation transporter, putative [Ricinus communis]
17 Hb_122556_010 0.3752111004 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
18 Hb_116020_010 0.3782131779 - - Uncharacterized protein TCM_023639 [Theobroma cacao]
19 Hb_007148_010 0.3872059314 - - PREDICTED: uncharacterized protein LOC103427080 [Malus domestica]
20 Hb_112046_010 0.3915409701 - - PREDICTED: uncharacterized protein LOC105772042 [Gossypium raimondii]

Gene co-expression network

sample Hb_126044_010 Hb_126044_010 Hb_007064_030 Hb_007064_030 Hb_126044_010--Hb_007064_030 Hb_057207_010 Hb_057207_010 Hb_126044_010--Hb_057207_010 Hb_071130_040 Hb_071130_040 Hb_126044_010--Hb_071130_040 Hb_124621_010 Hb_124621_010 Hb_126044_010--Hb_124621_010 Hb_001335_050 Hb_001335_050 Hb_126044_010--Hb_001335_050 Hb_006212_030 Hb_006212_030 Hb_126044_010--Hb_006212_030 Hb_007064_030--Hb_071130_040 Hb_004656_080 Hb_004656_080 Hb_007064_030--Hb_004656_080 Hb_003927_060 Hb_003927_060 Hb_007064_030--Hb_003927_060 Hb_007064_030--Hb_057207_010 Hb_007064_030--Hb_001335_050 Hb_057207_010--Hb_001335_050 Hb_107221_010 Hb_107221_010 Hb_057207_010--Hb_107221_010 Hb_005654_010 Hb_005654_010 Hb_057207_010--Hb_005654_010 Hb_001623_600 Hb_001623_600 Hb_057207_010--Hb_001623_600 Hb_071130_040--Hb_124621_010 Hb_012938_010 Hb_012938_010 Hb_071130_040--Hb_012938_010 Hb_071130_040--Hb_004656_080 Hb_071130_040--Hb_001335_050 Hb_071130_040--Hb_107221_010 Hb_071130_040--Hb_005654_010 Hb_094852_010 Hb_094852_010 Hb_124621_010--Hb_094852_010 Hb_065858_010 Hb_065858_010 Hb_124621_010--Hb_065858_010 Hb_124621_010--Hb_012938_010 Hb_178654_020 Hb_178654_020 Hb_124621_010--Hb_178654_020 Hb_031474_030 Hb_031474_030 Hb_124621_010--Hb_031474_030 Hb_001335_050--Hb_107221_010 Hb_001335_050--Hb_005654_010 Hb_000375_180 Hb_000375_180 Hb_001335_050--Hb_000375_180 Hb_003020_290 Hb_003020_290 Hb_006212_030--Hb_003020_290 Hb_000018_050 Hb_000018_050 Hb_006212_030--Hb_000018_050 Hb_006212_030--Hb_012938_010 Hb_006212_030--Hb_005654_010 Hb_000545_120 Hb_000545_120 Hb_006212_030--Hb_000545_120 Hb_000387_090 Hb_000387_090 Hb_006212_030--Hb_000387_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0245724 0.039402 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0450138 0.0354062 0 0 0.0729022

CAGE analysis