Hb_000387_090

Information

Type -
Description -
Location Contig387: 222641-227842
Sequence    

Annotation

kegg
ID pda:103720554
description uncharacterized LOC103720554
nr
ID XP_009625019.1
description PREDICTED: uncharacterized protein LOC104115978 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID M1DF56
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400037635 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000387_090 0.0 - - PREDICTED: uncharacterized protein LOC104115978 [Nicotiana tomentosiformis]
2 Hb_007479_030 0.2275181136 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 3 [Jatropha curcas]
3 Hb_000445_200 0.2276288196 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
4 Hb_001344_030 0.2652907879 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_116020_010 0.2662324894 - - Uncharacterized protein TCM_023639 [Theobroma cacao]
6 Hb_013253_030 0.2757128878 - - PREDICTED: protein argonaute 16 isoform X1 [Jatropha curcas]
7 Hb_033152_040 0.2791007234 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
8 Hb_000935_020 0.2820836149 - - putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana]
9 Hb_003020_290 0.2885538004 - - hypothetical protein CICLE_v10029104mg [Citrus clementina]
10 Hb_186054_010 0.2894815389 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
11 Hb_000757_090 0.2903702194 - - SPla/RYanodine receptor domain-containing protein isoform 3 [Theobroma cacao]
12 Hb_000043_100 0.2932273111 - - PREDICTED: uncharacterized protein LOC105797583 [Gossypium raimondii]
13 Hb_001623_600 0.2960514507 - - PREDICTED: uncharacterized protein LOC104748784 [Camelina sativa]
14 Hb_001818_110 0.2976347297 - - -
15 Hb_156924_020 0.308550516 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
16 Hb_006212_030 0.3174429233 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
17 Hb_158235_010 0.3224352808 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
18 Hb_000816_220 0.3253460194 - - PREDICTED: CBL-interacting protein kinase 18-like [Jatropha curcas]
19 Hb_104721_010 0.3296735676 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
20 Hb_000062_520 0.3357442874 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000387_090 Hb_000387_090 Hb_007479_030 Hb_007479_030 Hb_000387_090--Hb_007479_030 Hb_000445_200 Hb_000445_200 Hb_000387_090--Hb_000445_200 Hb_001344_030 Hb_001344_030 Hb_000387_090--Hb_001344_030 Hb_116020_010 Hb_116020_010 Hb_000387_090--Hb_116020_010 Hb_013253_030 Hb_013253_030 Hb_000387_090--Hb_013253_030 Hb_033152_040 Hb_033152_040 Hb_000387_090--Hb_033152_040 Hb_007479_030--Hb_033152_040 Hb_000816_220 Hb_000816_220 Hb_007479_030--Hb_000816_220 Hb_007479_030--Hb_013253_030 Hb_007479_030--Hb_000445_200 Hb_001484_080 Hb_001484_080 Hb_007479_030--Hb_001484_080 Hb_000445_200--Hb_013253_030 Hb_000184_030 Hb_000184_030 Hb_000445_200--Hb_000184_030 Hb_000367_140 Hb_000367_140 Hb_000445_200--Hb_000367_140 Hb_001623_600 Hb_001623_600 Hb_000445_200--Hb_001623_600 Hb_000757_090 Hb_000757_090 Hb_001344_030--Hb_000757_090 Hb_186054_010 Hb_186054_010 Hb_001344_030--Hb_186054_010 Hb_156924_020 Hb_156924_020 Hb_001344_030--Hb_156924_020 Hb_158235_010 Hb_158235_010 Hb_001344_030--Hb_158235_010 Hb_104721_010 Hb_104721_010 Hb_001344_030--Hb_104721_010 Hb_094852_010 Hb_094852_010 Hb_001344_030--Hb_094852_010 Hb_020378_050 Hb_020378_050 Hb_116020_010--Hb_020378_050 Hb_000003_360 Hb_000003_360 Hb_116020_010--Hb_000003_360 Hb_000935_020 Hb_000935_020 Hb_116020_010--Hb_000935_020 Hb_006649_070 Hb_006649_070 Hb_116020_010--Hb_006649_070 Hb_116020_010--Hb_001623_600 Hb_000043_100 Hb_000043_100 Hb_013253_030--Hb_000043_100 Hb_013253_030--Hb_158235_010 Hb_009572_010 Hb_009572_010 Hb_013253_030--Hb_009572_010 Hb_013253_030--Hb_000816_220 Hb_000329_580 Hb_000329_580 Hb_013253_030--Hb_000329_580 Hb_114861_010 Hb_114861_010 Hb_033152_040--Hb_114861_010 Hb_006538_180 Hb_006538_180 Hb_033152_040--Hb_006538_180 Hb_033152_040--Hb_001484_080 Hb_033152_040--Hb_000184_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0258804 0 0.0294 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0589302 0.0695447 0 0 0.242985

CAGE analysis