Hb_020378_050

Information

Type -
Description -
Location Contig20378: 41504-44847
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020378_050 0.0 - - -
2 Hb_116020_010 0.2298191793 - - Uncharacterized protein TCM_023639 [Theobroma cacao]
3 Hb_158869_010 0.3356975239 - - PREDICTED: uncharacterized protein LOC105778995 [Gossypium raimondii]
4 Hb_000003_360 0.3384029787 - - Putative inactive purple acid phosphatase 27 [Glycine soja]
5 Hb_000922_180 0.3547630978 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO5 [Jatropha curcas]
6 Hb_002259_050 0.3607749927 - - unnamed protein product [Vitis vinifera]
7 Hb_057207_010 0.3617601494 - - hypothetical protein F383_17010 [Gossypium arboreum]
8 Hb_175450_010 0.3624771684 - - -
9 Hb_049717_010 0.3650203062 - - PREDICTED: uncharacterized protein LOC105800955 [Gossypium raimondii]
10 Hb_035935_010 0.3690408261 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
11 Hb_126044_010 0.3719639943 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
12 Hb_003992_120 0.3897108187 - - hypothetical protein MTR_6g089560 [Medicago truncatula]
13 Hb_081207_010 0.3952962406 - - hypothetical protein JCGZ_17195 [Jatropha curcas]
14 Hb_006502_040 0.3968577782 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
15 Hb_001818_110 0.4015708573 - - -
16 Hb_004696_050 0.402958359 - - -
17 Hb_004108_090 0.4030927805 - - PREDICTED: uncharacterized protein LOC105650231 [Jatropha curcas]
18 Hb_054865_140 0.405731763 - - -
19 Hb_115326_010 0.4096146241 - - -
20 Hb_005822_030 0.4101511334 - - -

Gene co-expression network

sample Hb_020378_050 Hb_020378_050 Hb_116020_010 Hb_116020_010 Hb_020378_050--Hb_116020_010 Hb_158869_010 Hb_158869_010 Hb_020378_050--Hb_158869_010 Hb_000003_360 Hb_000003_360 Hb_020378_050--Hb_000003_360 Hb_000922_180 Hb_000922_180 Hb_020378_050--Hb_000922_180 Hb_002259_050 Hb_002259_050 Hb_020378_050--Hb_002259_050 Hb_057207_010 Hb_057207_010 Hb_020378_050--Hb_057207_010 Hb_000387_090 Hb_000387_090 Hb_116020_010--Hb_000387_090 Hb_116020_010--Hb_000003_360 Hb_000935_020 Hb_000935_020 Hb_116020_010--Hb_000935_020 Hb_006649_070 Hb_006649_070 Hb_116020_010--Hb_006649_070 Hb_001623_600 Hb_001623_600 Hb_116020_010--Hb_001623_600 Hb_049717_010 Hb_049717_010 Hb_158869_010--Hb_049717_010 Hb_035935_010 Hb_035935_010 Hb_158869_010--Hb_035935_010 Hb_002240_080 Hb_002240_080 Hb_158869_010--Hb_002240_080 Hb_107504_010 Hb_107504_010 Hb_158869_010--Hb_107504_010 Hb_082730_010 Hb_082730_010 Hb_158869_010--Hb_082730_010 Hb_000402_100 Hb_000402_100 Hb_000003_360--Hb_000402_100 Hb_000156_210 Hb_000156_210 Hb_000003_360--Hb_000156_210 Hb_000191_080 Hb_000191_080 Hb_000003_360--Hb_000191_080 Hb_001435_020 Hb_001435_020 Hb_000003_360--Hb_001435_020 Hb_101430_010 Hb_101430_010 Hb_000003_360--Hb_101430_010 Hb_000530_120 Hb_000530_120 Hb_000003_360--Hb_000530_120 Hb_001141_400 Hb_001141_400 Hb_000922_180--Hb_001141_400 Hb_007904_090 Hb_007904_090 Hb_000922_180--Hb_007904_090 Hb_000373_300 Hb_000373_300 Hb_000922_180--Hb_000373_300 Hb_002233_110 Hb_002233_110 Hb_000922_180--Hb_002233_110 Hb_000861_050 Hb_000861_050 Hb_000922_180--Hb_000861_050 Hb_000175_040 Hb_000175_040 Hb_000922_180--Hb_000175_040 Hb_081207_010 Hb_081207_010 Hb_002259_050--Hb_081207_010 Hb_175450_010 Hb_175450_010 Hb_002259_050--Hb_175450_010 Hb_000445_220 Hb_000445_220 Hb_002259_050--Hb_000445_220 Hb_006922_040 Hb_006922_040 Hb_002259_050--Hb_006922_040 Hb_002431_060 Hb_002431_060 Hb_002259_050--Hb_002431_060 Hb_002228_090 Hb_002228_090 Hb_002259_050--Hb_002228_090 Hb_126044_010 Hb_126044_010 Hb_057207_010--Hb_126044_010 Hb_001335_050 Hb_001335_050 Hb_057207_010--Hb_001335_050 Hb_107221_010 Hb_107221_010 Hb_057207_010--Hb_107221_010 Hb_005654_010 Hb_005654_010 Hb_057207_010--Hb_005654_010 Hb_007064_030 Hb_007064_030 Hb_057207_010--Hb_007064_030 Hb_057207_010--Hb_001623_600
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.191652 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.17541 0.137883 0 0 0.135341

CAGE analysis