Hb_158869_010

Information

Type -
Description -
Location Contig158869: 37-575
Sequence    

Annotation

kegg
ID sly:104649276
description uncharacterized LOC104649276
nr
ID XP_012458200.1
description PREDICTED: uncharacterized protein LOC105778995 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID M1DL63
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400040359 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_158869_010 0.0 - - PREDICTED: uncharacterized protein LOC105778995 [Gossypium raimondii]
2 Hb_049717_010 0.2135355894 - - PREDICTED: uncharacterized protein LOC105800955 [Gossypium raimondii]
3 Hb_035935_010 0.3099455669 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
4 Hb_002240_080 0.318752533 - - -
5 Hb_020378_050 0.3356975239 - - -
6 Hb_107504_010 0.3370624783 - - -
7 Hb_082730_010 0.3374726851 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
8 Hb_057207_010 0.3487738939 - - hypothetical protein F383_17010 [Gossypium arboreum]
9 Hb_020314_010 0.3521664786 - - -
10 Hb_001623_600 0.3527909474 - - PREDICTED: uncharacterized protein LOC104748784 [Camelina sativa]
11 Hb_001936_140 0.3600344716 - - PREDICTED: ATP-citrate synthase alpha chain protein 1 [Jatropha curcas]
12 Hb_004108_090 0.3606920443 - - PREDICTED: uncharacterized protein LOC105650231 [Jatropha curcas]
13 Hb_065858_010 0.3608966762 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
14 Hb_002636_020 0.3612383344 - - -
15 Hb_002780_050 0.3616557862 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105169583 [Sesamum indicum]
16 Hb_011242_030 0.362750956 - - -
17 Hb_000917_010 0.3650491271 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001369_240 0.3695516672 - - -
19 Hb_002918_040 0.3711173305 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
20 Hb_000922_180 0.3713376918 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO5 [Jatropha curcas]

Gene co-expression network

sample Hb_158869_010 Hb_158869_010 Hb_049717_010 Hb_049717_010 Hb_158869_010--Hb_049717_010 Hb_035935_010 Hb_035935_010 Hb_158869_010--Hb_035935_010 Hb_002240_080 Hb_002240_080 Hb_158869_010--Hb_002240_080 Hb_020378_050 Hb_020378_050 Hb_158869_010--Hb_020378_050 Hb_107504_010 Hb_107504_010 Hb_158869_010--Hb_107504_010 Hb_082730_010 Hb_082730_010 Hb_158869_010--Hb_082730_010 Hb_003813_160 Hb_003813_160 Hb_049717_010--Hb_003813_160 Hb_002874_040 Hb_002874_040 Hb_049717_010--Hb_002874_040 Hb_001623_600 Hb_001623_600 Hb_049717_010--Hb_001623_600 Hb_049717_010--Hb_035935_010 Hb_057207_010 Hb_057207_010 Hb_049717_010--Hb_057207_010 Hb_001233_040 Hb_001233_040 Hb_035935_010--Hb_001233_040 Hb_006869_010 Hb_006869_010 Hb_035935_010--Hb_006869_010 Hb_035935_010--Hb_003813_160 Hb_003683_080 Hb_003683_080 Hb_035935_010--Hb_003683_080 Hb_002615_100 Hb_002615_100 Hb_002240_080--Hb_002615_100 Hb_002240_080--Hb_082730_010 Hb_006588_010 Hb_006588_010 Hb_002240_080--Hb_006588_010 Hb_006922_040 Hb_006922_040 Hb_002240_080--Hb_006922_040 Hb_002259_050 Hb_002259_050 Hb_002240_080--Hb_002259_050 Hb_035905_010 Hb_035905_010 Hb_002240_080--Hb_035905_010 Hb_116020_010 Hb_116020_010 Hb_020378_050--Hb_116020_010 Hb_000003_360 Hb_000003_360 Hb_020378_050--Hb_000003_360 Hb_000922_180 Hb_000922_180 Hb_020378_050--Hb_000922_180 Hb_020378_050--Hb_002259_050 Hb_020378_050--Hb_057207_010 Hb_001936_140 Hb_001936_140 Hb_107504_010--Hb_001936_140 Hb_012799_020 Hb_012799_020 Hb_107504_010--Hb_012799_020 Hb_002918_040 Hb_002918_040 Hb_107504_010--Hb_002918_040 Hb_004108_090 Hb_004108_090 Hb_107504_010--Hb_004108_090 Hb_054074_010 Hb_054074_010 Hb_107504_010--Hb_054074_010 Hb_000453_300 Hb_000453_300 Hb_107504_010--Hb_000453_300 Hb_011457_020 Hb_011457_020 Hb_082730_010--Hb_011457_020 Hb_094245_010 Hb_094245_010 Hb_082730_010--Hb_094245_010 Hb_004297_060 Hb_004297_060 Hb_082730_010--Hb_004297_060 Hb_148908_020 Hb_148908_020 Hb_082730_010--Hb_148908_020 Hb_002180_010 Hb_002180_010 Hb_082730_010--Hb_002180_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.181058 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.774731 0.202889 0 0.126245 0.19063

CAGE analysis