Hb_004297_060

Information

Type -
Description -
Location Contig4297: 110244-113583
Sequence    

Annotation

kegg
ID tcc:TCM_041462
description Cucumisin protein
nr
ID XP_007015871.1
description Cucumisin protein [Theobroma cacao]
swissprot
ID Q9LLL8
description Subtilisin-like protease SBT4.14 OS=Arabidopsis thaliana GN=SBT4.14 PE=2 SV=1
trembl
ID A0A061GUF6
description Cucumisin protein OS=Theobroma cacao GN=TCM_041462 PE=4 SV=1
Gene Ontology
ID GO:0008233
description xylem serine proteinase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004297_060 0.0 - - Cucumisin protein [Theobroma cacao]
2 Hb_148908_020 0.0146694056 - - -
3 Hb_000608_130 0.1697034787 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
4 Hb_001437_290 0.2714956217 - - -
5 Hb_000080_050 0.2881614445 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38150-like [Vitis vinifera]
6 Hb_011707_010 0.2994931263 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
7 Hb_076693_010 0.2994931793 - - PREDICTED: beta-glucosidase 11-like isoform X2 [Jatropha curcas]
8 Hb_092027_010 0.2994940886 - - PREDICTED: uncharacterized protein LOC105761643 [Gossypium raimondii]
9 Hb_082730_010 0.3020659736 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
10 Hb_008031_020 0.302187167 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
11 Hb_001831_020 0.3022525106 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
12 Hb_000058_220 0.3023778724 - - hypothetical protein, partial [Staphylococcus aureus]
13 Hb_019677_010 0.3024206529 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
14 Hb_048125_010 0.3028887664 - - PREDICTED: uncharacterized protein LOC104104928 [Nicotiana tomentosiformis]
15 Hb_012522_020 0.3032892962 - - -
16 Hb_094245_010 0.3051119622 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
17 Hb_001863_060 0.3076862236 - - PIF-like transposase [Daucus carota]
18 Hb_011037_010 0.3137012417 - - PREDICTED: uncharacterized protein LOC105778976 [Gossypium raimondii]
19 Hb_003058_050 0.3140377492 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
20 Hb_002099_020 0.3145535799 - - cysteine proteinase inhibitor-like [Jatropha curcas]

Gene co-expression network

sample Hb_004297_060 Hb_004297_060 Hb_148908_020 Hb_148908_020 Hb_004297_060--Hb_148908_020 Hb_000608_130 Hb_000608_130 Hb_004297_060--Hb_000608_130 Hb_001437_290 Hb_001437_290 Hb_004297_060--Hb_001437_290 Hb_000080_050 Hb_000080_050 Hb_004297_060--Hb_000080_050 Hb_011707_010 Hb_011707_010 Hb_004297_060--Hb_011707_010 Hb_076693_010 Hb_076693_010 Hb_004297_060--Hb_076693_010 Hb_148908_020--Hb_000608_130 Hb_148908_020--Hb_001437_290 Hb_148908_020--Hb_000080_050 Hb_082730_010 Hb_082730_010 Hb_148908_020--Hb_082730_010 Hb_094245_010 Hb_094245_010 Hb_148908_020--Hb_094245_010 Hb_000608_130--Hb_000080_050 Hb_007713_020 Hb_007713_020 Hb_000608_130--Hb_007713_020 Hb_012522_020 Hb_012522_020 Hb_000608_130--Hb_012522_020 Hb_048125_010 Hb_048125_010 Hb_000608_130--Hb_048125_010 Hb_001135_230 Hb_001135_230 Hb_001437_290--Hb_001135_230 Hb_009777_010 Hb_009777_010 Hb_001437_290--Hb_009777_010 Hb_000205_170 Hb_000205_170 Hb_001437_290--Hb_000205_170 Hb_002099_020 Hb_002099_020 Hb_001437_290--Hb_002099_020 Hb_000080_050--Hb_007713_020 Hb_000345_470 Hb_000345_470 Hb_000080_050--Hb_000345_470 Hb_000080_050--Hb_012522_020 Hb_011707_010--Hb_076693_010 Hb_092027_010 Hb_092027_010 Hb_011707_010--Hb_092027_010 Hb_008031_020 Hb_008031_020 Hb_011707_010--Hb_008031_020 Hb_001831_020 Hb_001831_020 Hb_011707_010--Hb_001831_020 Hb_000058_220 Hb_000058_220 Hb_011707_010--Hb_000058_220 Hb_019677_010 Hb_019677_010 Hb_011707_010--Hb_019677_010 Hb_076693_010--Hb_092027_010 Hb_076693_010--Hb_008031_020 Hb_076693_010--Hb_001831_020 Hb_076693_010--Hb_000058_220 Hb_076693_010--Hb_019677_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0103024 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0188819 0 0 0.00590274 0

CAGE analysis