Hb_092027_010

Information

Type -
Description -
Location Contig92027: 9-488
Sequence    

Annotation

kegg
ID pda:103697039
description magnesium transporter NIPA2-like
nr
ID XP_012434965.1
description PREDICTED: uncharacterized protein LOC105761643 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID M1AL36
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400009723 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_092027_010 0.0 - - PREDICTED: uncharacterized protein LOC105761643 [Gossypium raimondii]
2 Hb_076693_010 0.0006095601 - - PREDICTED: beta-glucosidase 11-like isoform X2 [Jatropha curcas]
3 Hb_011707_010 0.0008032421 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_008031_020 0.043020461 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
5 Hb_001831_020 0.0435314387 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
6 Hb_000058_220 0.0444952909 - - hypothetical protein, partial [Staphylococcus aureus]
7 Hb_019677_010 0.044819461 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
8 Hb_048125_010 0.0482244966 - - PREDICTED: uncharacterized protein LOC104104928 [Nicotiana tomentosiformis]
9 Hb_012522_020 0.0509581422 - - -
10 Hb_011037_010 0.0972149824 - - PREDICTED: uncharacterized protein LOC105778976 [Gossypium raimondii]
11 Hb_003058_050 0.0983963349 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
12 Hb_002099_020 0.1001827929 - - cysteine proteinase inhibitor-like [Jatropha curcas]
13 Hb_007713_020 0.1087950569 - - -
14 Hb_000205_170 0.1460108385 - - PREDICTED: uncharacterized protein LOC103926801 [Pyrus x bretschneideri]
15 Hb_001135_230 0.2327448846 - - PREDICTED: protein REVEILLE 6-like isoform X3 [Gossypium raimondii]
16 Hb_022212_010 0.2454210218 - - -
17 Hb_000608_130 0.2974807702 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
18 Hb_004297_060 0.2994940886 - - Cucumisin protein [Theobroma cacao]
19 Hb_000345_470 0.3033259182 - - PREDICTED: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5 [Jatropha curcas]
20 Hb_010812_090 0.3080163173 - - PREDICTED: serine/threonine-protein kinase AtPK2/AtPK19-like [Jatropha curcas]

Gene co-expression network

sample Hb_092027_010 Hb_092027_010 Hb_076693_010 Hb_076693_010 Hb_092027_010--Hb_076693_010 Hb_011707_010 Hb_011707_010 Hb_092027_010--Hb_011707_010 Hb_008031_020 Hb_008031_020 Hb_092027_010--Hb_008031_020 Hb_001831_020 Hb_001831_020 Hb_092027_010--Hb_001831_020 Hb_000058_220 Hb_000058_220 Hb_092027_010--Hb_000058_220 Hb_019677_010 Hb_019677_010 Hb_092027_010--Hb_019677_010 Hb_076693_010--Hb_011707_010 Hb_076693_010--Hb_008031_020 Hb_076693_010--Hb_001831_020 Hb_076693_010--Hb_000058_220 Hb_076693_010--Hb_019677_010 Hb_011707_010--Hb_008031_020 Hb_011707_010--Hb_001831_020 Hb_011707_010--Hb_000058_220 Hb_011707_010--Hb_019677_010 Hb_008031_020--Hb_001831_020 Hb_008031_020--Hb_000058_220 Hb_008031_020--Hb_019677_010 Hb_048125_010 Hb_048125_010 Hb_008031_020--Hb_048125_010 Hb_012522_020 Hb_012522_020 Hb_008031_020--Hb_012522_020 Hb_001831_020--Hb_000058_220 Hb_001831_020--Hb_019677_010 Hb_001831_020--Hb_048125_010 Hb_001831_020--Hb_012522_020 Hb_000058_220--Hb_019677_010 Hb_000058_220--Hb_048125_010 Hb_000058_220--Hb_012522_020 Hb_019677_010--Hb_048125_010 Hb_019677_010--Hb_012522_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0849359 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.155058 0 0 0 0

CAGE analysis