Hb_000058_220

Information

Type -
Description -
Location Contig58: 422436-423913
Sequence    

Annotation

kegg
ID egr:104431759
description uncharacterized LOC104431759
nr
ID WP_042855005.1
description hypothetical protein, partial [Staphylococcus aureus]
swissprot
ID -
description -
trembl
ID A0A0B0NGV1
description ATP-dependent zinc metalloprotease FtsH OS=Gossypium arboreum GN=F383_19049 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000058_220 0.0 - - hypothetical protein, partial [Staphylococcus aureus]
2 Hb_019677_010 0.0003244604 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
3 Hb_001831_020 0.0009646896 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
4 Hb_008031_020 0.0014760956 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
5 Hb_048125_010 0.0037328134 - - PREDICTED: uncharacterized protein LOC104104928 [Nicotiana tomentosiformis]
6 Hb_012522_020 0.0064694777 - - -
7 Hb_011707_010 0.0436927188 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_076693_010 0.0438862414 - - PREDICTED: beta-glucosidase 11-like isoform X2 [Jatropha curcas]
9 Hb_092027_010 0.0444952909 - - PREDICTED: uncharacterized protein LOC105761643 [Gossypium raimondii]
10 Hb_007713_020 0.0644502825 - - -
11 Hb_011037_010 0.1414693322 - - PREDICTED: uncharacterized protein LOC105778976 [Gossypium raimondii]
12 Hb_003058_050 0.142645951 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
13 Hb_002099_020 0.1444251736 - - cysteine proteinase inhibitor-like [Jatropha curcas]
14 Hb_000205_170 0.190036618 - - PREDICTED: uncharacterized protein LOC103926801 [Pyrus x bretschneideri]
15 Hb_022212_010 0.2491105044 - - -
16 Hb_000608_130 0.2761393423 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
17 Hb_001135_230 0.2762033968 - - PREDICTED: protein REVEILLE 6-like isoform X3 [Gossypium raimondii]
18 Hb_004297_060 0.3023778724 - - Cucumisin protein [Theobroma cacao]
19 Hb_010812_090 0.3059321493 - - PREDICTED: serine/threonine-protein kinase AtPK2/AtPK19-like [Jatropha curcas]
20 Hb_148908_020 0.3147050437 - - -

Gene co-expression network

sample Hb_000058_220 Hb_000058_220 Hb_019677_010 Hb_019677_010 Hb_000058_220--Hb_019677_010 Hb_001831_020 Hb_001831_020 Hb_000058_220--Hb_001831_020 Hb_008031_020 Hb_008031_020 Hb_000058_220--Hb_008031_020 Hb_048125_010 Hb_048125_010 Hb_000058_220--Hb_048125_010 Hb_012522_020 Hb_012522_020 Hb_000058_220--Hb_012522_020 Hb_011707_010 Hb_011707_010 Hb_000058_220--Hb_011707_010 Hb_019677_010--Hb_001831_020 Hb_019677_010--Hb_008031_020 Hb_019677_010--Hb_048125_010 Hb_019677_010--Hb_012522_020 Hb_019677_010--Hb_011707_010 Hb_001831_020--Hb_008031_020 Hb_001831_020--Hb_048125_010 Hb_001831_020--Hb_012522_020 Hb_001831_020--Hb_011707_010 Hb_008031_020--Hb_048125_010 Hb_008031_020--Hb_012522_020 Hb_008031_020--Hb_011707_010 Hb_048125_010--Hb_012522_020 Hb_048125_010--Hb_011707_010 Hb_012522_020--Hb_011707_010 Hb_076693_010 Hb_076693_010 Hb_011707_010--Hb_076693_010 Hb_092027_010 Hb_092027_010 Hb_011707_010--Hb_092027_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0164493 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0375387 0 0 0 0

CAGE analysis