Hb_001437_290

Information

Type -
Description -
Location Contig1437: 300914-303565
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0004321
description 4-coumarate-- ligase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001437_290 0.0 - - -
2 Hb_001135_230 0.2352056219 - - PREDICTED: protein REVEILLE 6-like isoform X3 [Gossypium raimondii]
3 Hb_009777_010 0.2355612754 - - PREDICTED: uncharacterized protein LOC104120414 [Nicotiana tomentosiformis]
4 Hb_000205_170 0.264944849 - - PREDICTED: uncharacterized protein LOC103926801 [Pyrus x bretschneideri]
5 Hb_004297_060 0.2714956217 - - Cucumisin protein [Theobroma cacao]
6 Hb_148908_020 0.2724987273 - - -
7 Hb_002099_020 0.2893186521 - - cysteine proteinase inhibitor-like [Jatropha curcas]
8 Hb_003058_050 0.2903603522 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
9 Hb_011037_010 0.2910525834 - - PREDICTED: uncharacterized protein LOC105778976 [Gossypium raimondii]
10 Hb_004584_010 0.3023036859 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
11 Hb_001863_060 0.3451034766 - - PIF-like transposase [Daucus carota]
12 Hb_092027_010 0.3553716123 - - PREDICTED: uncharacterized protein LOC105761643 [Gossypium raimondii]
13 Hb_076693_010 0.3558109567 - - PREDICTED: beta-glucosidase 11-like isoform X2 [Jatropha curcas]
14 Hb_011707_010 0.3559506267 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
15 Hb_026766_010 0.3599154129 - - -
16 Hb_000284_160 0.3600368683 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
17 Hb_003335_070 0.3837054493 - - -
18 Hb_000345_470 0.3837283355 - - PREDICTED: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5 [Jatropha curcas]
19 Hb_002928_100 0.3846449561 - - -
20 Hb_008031_020 0.3871432115 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]

Gene co-expression network

sample Hb_001437_290 Hb_001437_290 Hb_001135_230 Hb_001135_230 Hb_001437_290--Hb_001135_230 Hb_009777_010 Hb_009777_010 Hb_001437_290--Hb_009777_010 Hb_000205_170 Hb_000205_170 Hb_001437_290--Hb_000205_170 Hb_004297_060 Hb_004297_060 Hb_001437_290--Hb_004297_060 Hb_148908_020 Hb_148908_020 Hb_001437_290--Hb_148908_020 Hb_002099_020 Hb_002099_020 Hb_001437_290--Hb_002099_020 Hb_001135_230--Hb_000205_170 Hb_001135_230--Hb_002099_020 Hb_003058_050 Hb_003058_050 Hb_001135_230--Hb_003058_050 Hb_011037_010 Hb_011037_010 Hb_001135_230--Hb_011037_010 Hb_092027_010 Hb_092027_010 Hb_001135_230--Hb_092027_010 Hb_076693_010 Hb_076693_010 Hb_001135_230--Hb_076693_010 Hb_001863_060 Hb_001863_060 Hb_009777_010--Hb_001863_060 Hb_166511_010 Hb_166511_010 Hb_009777_010--Hb_166511_010 Hb_009777_010--Hb_001135_230 Hb_000614_330 Hb_000614_330 Hb_009777_010--Hb_000614_330 Hb_012404_030 Hb_012404_030 Hb_009777_010--Hb_012404_030 Hb_000205_170--Hb_002099_020 Hb_000205_170--Hb_003058_050 Hb_000205_170--Hb_011037_010 Hb_000205_170--Hb_092027_010 Hb_000205_170--Hb_076693_010 Hb_004297_060--Hb_148908_020 Hb_000608_130 Hb_000608_130 Hb_004297_060--Hb_000608_130 Hb_000080_050 Hb_000080_050 Hb_004297_060--Hb_000080_050 Hb_011707_010 Hb_011707_010 Hb_004297_060--Hb_011707_010 Hb_004297_060--Hb_076693_010 Hb_148908_020--Hb_000608_130 Hb_148908_020--Hb_000080_050 Hb_082730_010 Hb_082730_010 Hb_148908_020--Hb_082730_010 Hb_094245_010 Hb_094245_010 Hb_148908_020--Hb_094245_010 Hb_002099_020--Hb_003058_050 Hb_002099_020--Hb_011037_010 Hb_002099_020--Hb_092027_010 Hb_002099_020--Hb_076693_010 Hb_002099_020--Hb_011707_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.614008 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.291777 0 0 0.103577 0

CAGE analysis