Hb_012404_030

Information

Type transcription factor
Description TF Family: GRF
Location Contig12404: 58512-60611
Sequence    

Annotation

kegg
ID rcu:RCOM_0022930
description hypothetical protein
nr
ID XP_012066450.1
description PREDICTED: growth-regulating factor 3 [Jatropha curcas]
swissprot
ID Q8L8A7
description Growth-regulating factor 4 OS=Arabidopsis thaliana GN=GRF4 PE=2 SV=1
trembl
ID A0A067LE06
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23645 PE=4 SV=1
Gene Ontology
ID GO:0005634
description growth-regulating factor 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07307: 59511-59749 , PASA_asmbl_07308: 60005-60404
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012404_030 0.0 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 3 [Jatropha curcas]
2 Hb_010770_010 0.2933346712 - - -
3 Hb_007805_020 0.2945343488 - - -
4 Hb_010979_010 0.3130013959 - - -
5 Hb_000214_090 0.3237695691 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
6 Hb_095853_010 0.3237700325 - - -
7 Hb_068347_010 0.3252592712 - - -
8 Hb_087221_010 0.3290879449 - - hypothetical protein CISIN_1g033698mg [Citrus sinensis]
9 Hb_000538_150 0.3299911292 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
10 Hb_176844_010 0.3303845463 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
11 Hb_009777_010 0.3362801944 - - PREDICTED: uncharacterized protein LOC104120414 [Nicotiana tomentosiformis]
12 Hb_000186_100 0.3394216649 - - PREDICTED: uncharacterized protein LOC105649284 isoform X1 [Jatropha curcas]
13 Hb_013124_010 0.3399269698 - - PREDICTED: (+)-neomenthol dehydrogenase-like isoform X1 [Jatropha curcas]
14 Hb_002998_050 0.340458815 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Sesamum indicum]
15 Hb_137543_010 0.3415832467 - - -
16 Hb_000200_190 0.3430941485 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 15 [Jatropha curcas]
17 Hb_010402_020 0.3434536233 - - PREDICTED: uncharacterized protein LOC104417027 [Eucalyptus grandis]
18 Hb_002192_070 0.3437242449 - - -
19 Hb_040506_010 0.3445074596 - - protein binding protein, putative [Ricinus communis]
20 Hb_000313_320 0.3474631223 - - PREDICTED: protein kinase PINOID [Jatropha curcas]

Gene co-expression network

sample Hb_012404_030 Hb_012404_030 Hb_010770_010 Hb_010770_010 Hb_012404_030--Hb_010770_010 Hb_007805_020 Hb_007805_020 Hb_012404_030--Hb_007805_020 Hb_010979_010 Hb_010979_010 Hb_012404_030--Hb_010979_010 Hb_000214_090 Hb_000214_090 Hb_012404_030--Hb_000214_090 Hb_095853_010 Hb_095853_010 Hb_012404_030--Hb_095853_010 Hb_068347_010 Hb_068347_010 Hb_012404_030--Hb_068347_010 Hb_176844_010 Hb_176844_010 Hb_010770_010--Hb_176844_010 Hb_012384_050 Hb_012384_050 Hb_010770_010--Hb_012384_050 Hb_087221_010 Hb_087221_010 Hb_010770_010--Hb_087221_010 Hb_073212_010 Hb_073212_010 Hb_010770_010--Hb_073212_010 Hb_007382_040 Hb_007382_040 Hb_010770_010--Hb_007382_040 Hb_000046_410 Hb_000046_410 Hb_010770_010--Hb_000046_410 Hb_007805_020--Hb_068347_010 Hb_007805_020--Hb_010979_010 Hb_007926_010 Hb_007926_010 Hb_007805_020--Hb_007926_010 Hb_004330_030 Hb_004330_030 Hb_007805_020--Hb_004330_030 Hb_171108_010 Hb_171108_010 Hb_007805_020--Hb_171108_010 Hb_007805_020--Hb_010770_010 Hb_113823_010 Hb_113823_010 Hb_010979_010--Hb_113823_010 Hb_034569_020 Hb_034569_020 Hb_010979_010--Hb_034569_020 Hb_184798_040 Hb_184798_040 Hb_010979_010--Hb_184798_040 Hb_009742_010 Hb_009742_010 Hb_010979_010--Hb_009742_010 Hb_004899_280 Hb_004899_280 Hb_010979_010--Hb_004899_280 Hb_040779_010 Hb_040779_010 Hb_000214_090--Hb_040779_010 Hb_012107_070 Hb_012107_070 Hb_000214_090--Hb_012107_070 Hb_000988_060 Hb_000988_060 Hb_000214_090--Hb_000988_060 Hb_005535_060 Hb_005535_060 Hb_000214_090--Hb_005535_060 Hb_004534_020 Hb_004534_020 Hb_000214_090--Hb_004534_020 Hb_036693_010 Hb_036693_010 Hb_000214_090--Hb_036693_010 Hb_000427_080 Hb_000427_080 Hb_095853_010--Hb_000427_080 Hb_095853_010--Hb_171108_010 Hb_008727_070 Hb_008727_070 Hb_095853_010--Hb_008727_070 Hb_095853_010--Hb_004899_280 Hb_006634_020 Hb_006634_020 Hb_095853_010--Hb_006634_020 Hb_002843_090 Hb_002843_090 Hb_068347_010--Hb_002843_090 Hb_000347_090 Hb_000347_090 Hb_068347_010--Hb_000347_090 Hb_011903_010 Hb_011903_010 Hb_068347_010--Hb_011903_010 Hb_020549_010 Hb_020549_010 Hb_068347_010--Hb_020549_010 Hb_000982_150 Hb_000982_150 Hb_068347_010--Hb_000982_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.434815 0.0636616 0.0526754 0 0.0989661 0.0181797
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0794767 0 0 0.0250362 0

CAGE analysis