Hb_095853_010

Information

Type -
Description -
Location Contig95853: 1601-2485
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_095853_010 0.0 - - -
2 Hb_000427_080 0.2510967451 - - PREDICTED: uncharacterized protein LOC105775598 [Gossypium raimondii]
3 Hb_171108_010 0.3198549511 - - -
4 Hb_012404_030 0.3237700325 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 3 [Jatropha curcas]
5 Hb_008727_070 0.339371735 - - PREDICTED: 16.9 kDa class I heat shock protein 1 isoform X1 [Zea mays]
6 Hb_004899_280 0.341086125 - - -
7 Hb_006634_020 0.344718285 - - -
8 Hb_002311_230 0.3512817603 - - -
9 Hb_002192_070 0.3521420141 - - -
10 Hb_185326_010 0.3591630672 - - conserved hypothetical protein [Ricinus communis]
11 Hb_010770_010 0.3633478365 - - -
12 Hb_000668_010 0.3657038307 - - PREDICTED: probable beta-D-xylosidase 7 [Jatropha curcas]
13 Hb_034569_020 0.3661133551 - - -
14 Hb_000329_050 0.3664077856 - - -
15 Hb_000840_170 0.3673242723 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
16 Hb_010979_010 0.3679544499 - - -
17 Hb_000189_200 0.3706135235 - - hypothetical protein JCGZ_02242 [Jatropha curcas]
18 Hb_003534_040 0.3714818663 - - hypothetical protein POPTR_0009s14420g [Populus trichocarpa]
19 Hb_001944_030 0.372111216 - - hypothetical protein POPTR_0007s06520g [Populus trichocarpa]
20 Hb_003626_060 0.3724443233 - - PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_095853_010 Hb_095853_010 Hb_000427_080 Hb_000427_080 Hb_095853_010--Hb_000427_080 Hb_171108_010 Hb_171108_010 Hb_095853_010--Hb_171108_010 Hb_012404_030 Hb_012404_030 Hb_095853_010--Hb_012404_030 Hb_008727_070 Hb_008727_070 Hb_095853_010--Hb_008727_070 Hb_004899_280 Hb_004899_280 Hb_095853_010--Hb_004899_280 Hb_006634_020 Hb_006634_020 Hb_095853_010--Hb_006634_020 Hb_001461_020 Hb_001461_020 Hb_000427_080--Hb_001461_020 Hb_000003_260 Hb_000003_260 Hb_000427_080--Hb_000003_260 Hb_006054_050 Hb_006054_050 Hb_000427_080--Hb_006054_050 Hb_137276_010 Hb_137276_010 Hb_000427_080--Hb_137276_010 Hb_000062_110 Hb_000062_110 Hb_000427_080--Hb_000062_110 Hb_000905_070 Hb_000905_070 Hb_171108_010--Hb_000905_070 Hb_002493_030 Hb_002493_030 Hb_171108_010--Hb_002493_030 Hb_004007_150 Hb_004007_150 Hb_171108_010--Hb_004007_150 Hb_043655_010 Hb_043655_010 Hb_171108_010--Hb_043655_010 Hb_003534_040 Hb_003534_040 Hb_171108_010--Hb_003534_040 Hb_000922_310 Hb_000922_310 Hb_171108_010--Hb_000922_310 Hb_010770_010 Hb_010770_010 Hb_012404_030--Hb_010770_010 Hb_007805_020 Hb_007805_020 Hb_012404_030--Hb_007805_020 Hb_010979_010 Hb_010979_010 Hb_012404_030--Hb_010979_010 Hb_000214_090 Hb_000214_090 Hb_012404_030--Hb_000214_090 Hb_068347_010 Hb_068347_010 Hb_012404_030--Hb_068347_010 Hb_000171_040 Hb_000171_040 Hb_008727_070--Hb_000171_040 Hb_005975_020 Hb_005975_020 Hb_008727_070--Hb_005975_020 Hb_003362_060 Hb_003362_060 Hb_008727_070--Hb_003362_060 Hb_000574_140 Hb_000574_140 Hb_008727_070--Hb_000574_140 Hb_131949_010 Hb_131949_010 Hb_008727_070--Hb_131949_010 Hb_020570_010 Hb_020570_010 Hb_008727_070--Hb_020570_010 Hb_034569_020 Hb_034569_020 Hb_004899_280--Hb_034569_020 Hb_004899_280--Hb_000922_310 Hb_004899_280--Hb_131949_010 Hb_004899_280--Hb_005975_020 Hb_009742_010 Hb_009742_010 Hb_004899_280--Hb_009742_010 Hb_004899_280--Hb_003362_060 Hb_034350_020 Hb_034350_020 Hb_006634_020--Hb_034350_020 Hb_000707_060 Hb_000707_060 Hb_006634_020--Hb_000707_060 Hb_000227_250 Hb_000227_250 Hb_006634_020--Hb_000227_250 Hb_002374_280 Hb_002374_280 Hb_006634_020--Hb_002374_280 Hb_000218_030 Hb_000218_030 Hb_006634_020--Hb_000218_030 Hb_000003_340 Hb_000003_340 Hb_006634_020--Hb_000003_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.2808 0.428959 0.0909883 0 0.887846 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.269703 0 0 0.0944803 0.351631

CAGE analysis