Hb_010979_010

Information

Type -
Description -
Location Contig10979: 605-7728
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010979_010 0.0 - - -
2 Hb_113823_010 0.1777586758 - - -
3 Hb_034569_020 0.2104552941 - - -
4 Hb_007805_020 0.2240901379 - - -
5 Hb_184798_040 0.2437550966 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
6 Hb_009742_010 0.2512213843 - - -
7 Hb_004899_280 0.2627581478 - - -
8 Hb_131949_010 0.2783889368 - - PREDICTED: uncharacterized protein LOC104227863, partial [Nicotiana sylvestris]
9 Hb_000922_310 0.279491284 transcription factor TF Family: MYB PREDICTED: transcription factor MYB98-like [Jatropha curcas]
10 Hb_003362_060 0.2937623206 - - -
11 Hb_000146_060 0.3018959702 - - -
12 Hb_012404_030 0.3130013959 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 3 [Jatropha curcas]
13 Hb_001214_170 0.3219669593 - - pyruvate kinase family protein [Medicago truncatula]
14 Hb_004330_030 0.326028372 - - -
15 Hb_068347_010 0.3350532738 - - -
16 Hb_007926_010 0.3411807853 - - PREDICTED: UPF0554 protein C2orf43 homolog isoform X4 [Citrus sinensis]
17 Hb_171108_010 0.3445151868 - - -
18 Hb_012500_010 0.3446401558 - - Ran GTPase binding protein, putative [Ricinus communis]
19 Hb_099990_030 0.3447032999 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
20 Hb_011909_090 0.3528672 transcription factor TF Family: NOZZLE PREDICTED: uncharacterized protein LOC105633212 [Jatropha curcas]

Gene co-expression network

sample Hb_010979_010 Hb_010979_010 Hb_113823_010 Hb_113823_010 Hb_010979_010--Hb_113823_010 Hb_034569_020 Hb_034569_020 Hb_010979_010--Hb_034569_020 Hb_007805_020 Hb_007805_020 Hb_010979_010--Hb_007805_020 Hb_184798_040 Hb_184798_040 Hb_010979_010--Hb_184798_040 Hb_009742_010 Hb_009742_010 Hb_010979_010--Hb_009742_010 Hb_004899_280 Hb_004899_280 Hb_010979_010--Hb_004899_280 Hb_001214_170 Hb_001214_170 Hb_113823_010--Hb_001214_170 Hb_000123_100 Hb_000123_100 Hb_113823_010--Hb_000123_100 Hb_004524_070 Hb_004524_070 Hb_113823_010--Hb_004524_070 Hb_000146_060 Hb_000146_060 Hb_113823_010--Hb_000146_060 Hb_099990_030 Hb_099990_030 Hb_113823_010--Hb_099990_030 Hb_000922_310 Hb_000922_310 Hb_034569_020--Hb_000922_310 Hb_034569_020--Hb_009742_010 Hb_034569_020--Hb_004899_280 Hb_131949_010 Hb_131949_010 Hb_034569_020--Hb_131949_010 Hb_034569_020--Hb_184798_040 Hb_068347_010 Hb_068347_010 Hb_007805_020--Hb_068347_010 Hb_007926_010 Hb_007926_010 Hb_007805_020--Hb_007926_010 Hb_004330_030 Hb_004330_030 Hb_007805_020--Hb_004330_030 Hb_171108_010 Hb_171108_010 Hb_007805_020--Hb_171108_010 Hb_010770_010 Hb_010770_010 Hb_007805_020--Hb_010770_010 Hb_184798_040--Hb_131949_010 Hb_003362_060 Hb_003362_060 Hb_184798_040--Hb_003362_060 Hb_000171_040 Hb_000171_040 Hb_184798_040--Hb_000171_040 Hb_184798_040--Hb_009742_010 Hb_184798_040--Hb_004899_280 Hb_009742_010--Hb_000922_310 Hb_009742_010--Hb_004899_280 Hb_009742_010--Hb_131949_010 Hb_012500_010 Hb_012500_010 Hb_009742_010--Hb_012500_010 Hb_004899_280--Hb_000922_310 Hb_004899_280--Hb_131949_010 Hb_005975_020 Hb_005975_020 Hb_004899_280--Hb_005975_020 Hb_004899_280--Hb_003362_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.193047 0.0647605 0.0241359 0 0.0621465 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis