Hb_131949_010

Information

Type -
Description -
Location Contig131949: 4846-9694
Sequence    

Annotation

kegg
ID pda:103724140
description uncharacterized LOC103724140
nr
ID XP_009778522.1
description PREDICTED: uncharacterized protein LOC104227863, partial [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID M1DL63
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400040359 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_131949_010 0.0 - - PREDICTED: uncharacterized protein LOC104227863, partial [Nicotiana sylvestris]
2 Hb_003362_060 0.0229552583 - - -
3 Hb_084426_010 0.1423587543 - - -
4 Hb_184798_040 0.1510387448 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
5 Hb_000171_040 0.1579292174 - - -
6 Hb_034569_020 0.1931429447 - - -
7 Hb_004899_280 0.2192335615 - - -
8 Hb_009742_010 0.233411842 - - -
9 Hb_000922_310 0.2376445852 transcription factor TF Family: MYB PREDICTED: transcription factor MYB98-like [Jatropha curcas]
10 Hb_005975_020 0.240911706 - - -
11 Hb_000146_060 0.2620684733 - - -
12 Hb_022693_150 0.2740242641 - - -
13 Hb_010979_010 0.2783889368 - - -
14 Hb_171659_010 0.2954041531 - - PREDICTED: uncharacterized protein LOC104903214 [Beta vulgaris subsp. vulgaris]
15 Hb_004330_030 0.3004860219 - - -
16 Hb_008727_070 0.3090988223 - - PREDICTED: 16.9 kDa class I heat shock protein 1 isoform X1 [Zea mays]
17 Hb_004939_020 0.3203100254 - - gag/pol protein [Bryonia dioica]
18 Hb_113823_010 0.3265545947 - - -
19 Hb_171108_010 0.3339744805 - - -
20 Hb_006816_510 0.3349354251 - - Pectinesterase inhibitor, putative [Ricinus communis]

Gene co-expression network

sample Hb_131949_010 Hb_131949_010 Hb_003362_060 Hb_003362_060 Hb_131949_010--Hb_003362_060 Hb_084426_010 Hb_084426_010 Hb_131949_010--Hb_084426_010 Hb_184798_040 Hb_184798_040 Hb_131949_010--Hb_184798_040 Hb_000171_040 Hb_000171_040 Hb_131949_010--Hb_000171_040 Hb_034569_020 Hb_034569_020 Hb_131949_010--Hb_034569_020 Hb_004899_280 Hb_004899_280 Hb_131949_010--Hb_004899_280 Hb_003362_060--Hb_084426_010 Hb_003362_060--Hb_000171_040 Hb_003362_060--Hb_184798_040 Hb_003362_060--Hb_034569_020 Hb_003362_060--Hb_004899_280 Hb_022693_150 Hb_022693_150 Hb_084426_010--Hb_022693_150 Hb_084426_010--Hb_000171_040 Hb_000922_310 Hb_000922_310 Hb_084426_010--Hb_000922_310 Hb_000362_240 Hb_000362_240 Hb_084426_010--Hb_000362_240 Hb_184798_040--Hb_000171_040 Hb_184798_040--Hb_034569_020 Hb_009742_010 Hb_009742_010 Hb_184798_040--Hb_009742_010 Hb_184798_040--Hb_004899_280 Hb_006816_510 Hb_006816_510 Hb_000171_040--Hb_006816_510 Hb_005975_020 Hb_005975_020 Hb_000171_040--Hb_005975_020 Hb_034569_020--Hb_000922_310 Hb_034569_020--Hb_009742_010 Hb_034569_020--Hb_004899_280 Hb_010979_010 Hb_010979_010 Hb_034569_020--Hb_010979_010 Hb_004899_280--Hb_000922_310 Hb_004899_280--Hb_005975_020 Hb_004899_280--Hb_009742_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0100578 0.00830233 0 0 0.00941582 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis