Hb_004899_280

Information

Type -
Description -
Location Contig4899: 227027-228462
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004899_280 0.0 - - -
2 Hb_034569_020 0.1663607973 - - -
3 Hb_000922_310 0.2086444872 transcription factor TF Family: MYB PREDICTED: transcription factor MYB98-like [Jatropha curcas]
4 Hb_131949_010 0.2192335615 - - PREDICTED: uncharacterized protein LOC104227863, partial [Nicotiana sylvestris]
5 Hb_005975_020 0.2200258855 - - -
6 Hb_009742_010 0.2239918406 - - -
7 Hb_003362_060 0.2350370179 - - -
8 Hb_184798_040 0.239697365 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
9 Hb_010979_010 0.2627581478 - - -
10 Hb_004330_030 0.2814609034 - - -
11 Hb_171108_010 0.2849532338 - - -
12 Hb_084426_010 0.2926803 - - -
13 Hb_007805_020 0.3036132751 - - -
14 Hb_000107_320 0.3150595234 - - hypothetical protein POPTR_0004s21930g [Populus trichocarpa]
15 Hb_003534_040 0.3162501372 - - hypothetical protein POPTR_0009s14420g [Populus trichocarpa]
16 Hb_171659_010 0.3354019739 - - PREDICTED: uncharacterized protein LOC104903214 [Beta vulgaris subsp. vulgaris]
17 Hb_000171_040 0.3360550723 - - -
18 Hb_043655_010 0.3408583545 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
19 Hb_095853_010 0.341086125 - - -
20 Hb_001251_030 0.3489436515 - - hypothetical protein PHAVU_002G189800g [Phaseolus vulgaris]

Gene co-expression network

sample Hb_004899_280 Hb_004899_280 Hb_034569_020 Hb_034569_020 Hb_004899_280--Hb_034569_020 Hb_000922_310 Hb_000922_310 Hb_004899_280--Hb_000922_310 Hb_131949_010 Hb_131949_010 Hb_004899_280--Hb_131949_010 Hb_005975_020 Hb_005975_020 Hb_004899_280--Hb_005975_020 Hb_009742_010 Hb_009742_010 Hb_004899_280--Hb_009742_010 Hb_003362_060 Hb_003362_060 Hb_004899_280--Hb_003362_060 Hb_034569_020--Hb_000922_310 Hb_034569_020--Hb_009742_010 Hb_034569_020--Hb_131949_010 Hb_010979_010 Hb_010979_010 Hb_034569_020--Hb_010979_010 Hb_184798_040 Hb_184798_040 Hb_034569_020--Hb_184798_040 Hb_046727_010 Hb_046727_010 Hb_000922_310--Hb_046727_010 Hb_080765_020 Hb_080765_020 Hb_000922_310--Hb_080765_020 Hb_000098_280 Hb_000098_280 Hb_000922_310--Hb_000098_280 Hb_007008_020 Hb_007008_020 Hb_000922_310--Hb_007008_020 Hb_131949_010--Hb_003362_060 Hb_084426_010 Hb_084426_010 Hb_131949_010--Hb_084426_010 Hb_131949_010--Hb_184798_040 Hb_000171_040 Hb_000171_040 Hb_131949_010--Hb_000171_040 Hb_000107_320 Hb_000107_320 Hb_005975_020--Hb_000107_320 Hb_005975_020--Hb_003362_060 Hb_005975_020--Hb_131949_010 Hb_005975_020--Hb_000171_040 Hb_005975_020--Hb_184798_040 Hb_009742_010--Hb_000922_310 Hb_009742_010--Hb_131949_010 Hb_009742_010--Hb_184798_040 Hb_012500_010 Hb_012500_010 Hb_009742_010--Hb_012500_010 Hb_003362_060--Hb_084426_010 Hb_003362_060--Hb_000171_040 Hb_003362_060--Hb_184798_040 Hb_003362_060--Hb_034569_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.281715 0.0974914 0 0 0.154768 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0285703 0

CAGE analysis