Hb_000107_320

Information

Type -
Description -
Location Contig107: 240692-241120
Sequence    

Annotation

kegg
ID pop:POPTR_0004s21930g
description hypothetical protein
nr
ID XP_006384882.1
description hypothetical protein POPTR_0004s21930g [Populus trichocarpa]
swissprot
ID Q9SZL4
description RING-H2 finger protein ATL18 OS=Arabidopsis thaliana GN=ATL18 PE=2 SV=1
trembl
ID U5GKF6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s21930g PE=4 SV=1
Gene Ontology
ID GO:0005515
description ring-h2 finger protein atl18

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_320 0.0 - - hypothetical protein POPTR_0004s21930g [Populus trichocarpa]
2 Hb_005975_020 0.1157024748 - - -
3 Hb_001999_190 0.2574886754 - - GDP-mannose transporter, putative [Ricinus communis]
4 Hb_000908_010 0.276835402 - - Disease resistance protein RGA2, putative [Ricinus communis]
5 Hb_009012_010 0.2819886832 - - -
6 Hb_015388_030 0.2881369165 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_012753_080 0.2931213237 - - -
8 Hb_000171_040 0.3098029727 - - -
9 Hb_004899_280 0.3150595234 - - -
10 Hb_000025_550 0.3278747137 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000402_010 0.3295456671 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 6 [Jatropha curcas]
12 Hb_003362_060 0.3328531627 - - -
13 Hb_008727_070 0.3352068036 - - PREDICTED: 16.9 kDa class I heat shock protein 1 isoform X1 [Zea mays]
14 Hb_008983_060 0.3376812837 desease resistance Gene Name: NB-ARC NB-ARC domain-containing disease resistance protein, putative [Theobroma cacao]
15 Hb_131949_010 0.3389926475 - - PREDICTED: uncharacterized protein LOC104227863, partial [Nicotiana sylvestris]
16 Hb_006711_050 0.3403537698 - - PREDICTED: putative germin-like protein 2-1 [Jatropha curcas]
17 Hb_004330_030 0.3409734087 - - -
18 Hb_012702_030 0.3409779266 - - hypothetical protein POPTR_0077s002001g, partial [Populus trichocarpa]
19 Hb_000329_640 0.342917467 - - -
20 Hb_184798_040 0.3429331951 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]

Gene co-expression network

sample Hb_000107_320 Hb_000107_320 Hb_005975_020 Hb_005975_020 Hb_000107_320--Hb_005975_020 Hb_001999_190 Hb_001999_190 Hb_000107_320--Hb_001999_190 Hb_000908_010 Hb_000908_010 Hb_000107_320--Hb_000908_010 Hb_009012_010 Hb_009012_010 Hb_000107_320--Hb_009012_010 Hb_015388_030 Hb_015388_030 Hb_000107_320--Hb_015388_030 Hb_012753_080 Hb_012753_080 Hb_000107_320--Hb_012753_080 Hb_004899_280 Hb_004899_280 Hb_005975_020--Hb_004899_280 Hb_003362_060 Hb_003362_060 Hb_005975_020--Hb_003362_060 Hb_131949_010 Hb_131949_010 Hb_005975_020--Hb_131949_010 Hb_000171_040 Hb_000171_040 Hb_005975_020--Hb_000171_040 Hb_184798_040 Hb_184798_040 Hb_005975_020--Hb_184798_040 Hb_008983_060 Hb_008983_060 Hb_001999_190--Hb_008983_060 Hb_001491_060 Hb_001491_060 Hb_001999_190--Hb_001491_060 Hb_184705_010 Hb_184705_010 Hb_001999_190--Hb_184705_010 Hb_001148_020 Hb_001148_020 Hb_001999_190--Hb_001148_020 Hb_001999_190--Hb_005975_020 Hb_001545_230 Hb_001545_230 Hb_000908_010--Hb_001545_230 Hb_000908_010--Hb_008983_060 Hb_030827_050 Hb_030827_050 Hb_000908_010--Hb_030827_050 Hb_003947_010 Hb_003947_010 Hb_000908_010--Hb_003947_010 Hb_000908_010--Hb_001999_190 Hb_006452_130 Hb_006452_130 Hb_009012_010--Hb_006452_130 Hb_000402_010 Hb_000402_010 Hb_009012_010--Hb_000402_010 Hb_009012_010--Hb_005975_020 Hb_117240_010 Hb_117240_010 Hb_009012_010--Hb_117240_010 Hb_054328_010 Hb_054328_010 Hb_009012_010--Hb_054328_010 Hb_010261_010 Hb_010261_010 Hb_015388_030--Hb_010261_010 Hb_012404_040 Hb_012404_040 Hb_015388_030--Hb_012404_040 Hb_000181_440 Hb_000181_440 Hb_015388_030--Hb_000181_440 Hb_003096_040 Hb_003096_040 Hb_015388_030--Hb_003096_040 Hb_001269_040 Hb_001269_040 Hb_015388_030--Hb_001269_040 Hb_025194_010 Hb_025194_010 Hb_015388_030--Hb_025194_010 Hb_005699_080 Hb_005699_080 Hb_012753_080--Hb_005699_080 Hb_000190_100 Hb_000190_100 Hb_012753_080--Hb_000190_100 Hb_006711_050 Hb_006711_050 Hb_012753_080--Hb_006711_050 Hb_012702_030 Hb_012702_030 Hb_012753_080--Hb_012702_030 Hb_000152_020 Hb_000152_020 Hb_012753_080--Hb_000152_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.074054 0.12884 0 0 0.0697795 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0581407 0

CAGE analysis