Hb_000152_020

Information

Type transcription factor
Description TF Family: bHLH
Location Contig152: 9082-26458
Sequence    

Annotation

kegg
ID rcu:RCOM_1498370
description DNA binding protein, putative
nr
ID XP_012090357.1
description PREDICTED: transcription factor bHLH118-like [Jatropha curcas]
swissprot
ID Q9STJ6
description Transcription factor bHLH126 OS=Arabidopsis thaliana GN=BHLH126 PE=2 SV=1
trembl
ID A0A067JQS6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26191 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor bhlh118-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_020 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH118-like [Jatropha curcas]
2 Hb_000190_100 0.1779641963 transcription factor TF Family: C2H2 hypothetical protein POPTR_0002s04880g [Populus trichocarpa]
3 Hb_000140_410 0.2068230423 - - PREDICTED: uncharacterized protein At5g41620 isoform X1 [Jatropha curcas]
4 Hb_000215_410 0.214988387 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
5 Hb_004410_150 0.2264222869 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 1 [Jatropha curcas]
6 Hb_001529_050 0.2323297291 - - PREDICTED: ribulose bisphosphate carboxylase small chain clone 512-like [Jatropha curcas]
7 Hb_000086_660 0.2326544593 - - PREDICTED: phytosulfokine receptor 1-like [Jatropha curcas]
8 Hb_004788_040 0.2343646449 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_000390_100 0.2385488737 - - alpha-hydroxynitrile lyase family protein [Populus trichocarpa]
10 Hb_001269_690 0.2415811528 - - conserved hypothetical protein [Ricinus communis]
11 Hb_006586_030 0.2421672558 - - PREDICTED: transcription factor LHW isoform X1 [Jatropha curcas]
12 Hb_001004_110 0.2450577414 - - conserved hypothetical protein [Ricinus communis]
13 Hb_008066_070 0.2450739322 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]
14 Hb_001104_240 0.2458126849 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
15 Hb_007520_020 0.2490369076 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1-deoxy-D-xylulose-5-phosphate reductoisomerase [Hevea brasiliensis]
16 Hb_060237_020 0.2498045285 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002301_380 0.2502281346 - - PREDICTED: VQ motif-containing protein 4 [Jatropha curcas]
18 Hb_005841_080 0.2544789055 - - hypothetical protein POPTR_0018s11370g [Populus trichocarpa]
19 Hb_002273_050 0.2574742764 - - PREDICTED: geranylgeranyl diphosphate reductase, chloroplastic-like [Jatropha curcas]
20 Hb_001117_070 0.2577448058 - - 30S ribosomal protein S19, putative [Ricinus communis]

Gene co-expression network

sample Hb_000152_020 Hb_000152_020 Hb_000190_100 Hb_000190_100 Hb_000152_020--Hb_000190_100 Hb_000140_410 Hb_000140_410 Hb_000152_020--Hb_000140_410 Hb_000215_410 Hb_000215_410 Hb_000152_020--Hb_000215_410 Hb_004410_150 Hb_004410_150 Hb_000152_020--Hb_004410_150 Hb_001529_050 Hb_001529_050 Hb_000152_020--Hb_001529_050 Hb_000086_660 Hb_000086_660 Hb_000152_020--Hb_000086_660 Hb_007380_010 Hb_007380_010 Hb_000190_100--Hb_007380_010 Hb_017434_060 Hb_017434_060 Hb_000190_100--Hb_017434_060 Hb_005841_080 Hb_005841_080 Hb_000190_100--Hb_005841_080 Hb_000190_100--Hb_000215_410 Hb_000190_100--Hb_000140_410 Hb_001269_690 Hb_001269_690 Hb_000140_410--Hb_001269_690 Hb_008066_070 Hb_008066_070 Hb_000140_410--Hb_008066_070 Hb_020805_170 Hb_020805_170 Hb_000140_410--Hb_020805_170 Hb_000905_170 Hb_000905_170 Hb_000140_410--Hb_000905_170 Hb_000140_410--Hb_001529_050 Hb_003623_070 Hb_003623_070 Hb_000140_410--Hb_003623_070 Hb_002273_050 Hb_002273_050 Hb_000215_410--Hb_002273_050 Hb_129204_060 Hb_129204_060 Hb_000215_410--Hb_129204_060 Hb_002273_080 Hb_002273_080 Hb_000215_410--Hb_002273_080 Hb_002235_240 Hb_002235_240 Hb_000215_410--Hb_002235_240 Hb_000836_120 Hb_000836_120 Hb_000215_410--Hb_000836_120 Hb_000215_410--Hb_001269_690 Hb_001625_010 Hb_001625_010 Hb_004410_150--Hb_001625_010 Hb_002805_300 Hb_002805_300 Hb_004410_150--Hb_002805_300 Hb_001799_190 Hb_001799_190 Hb_004410_150--Hb_001799_190 Hb_001248_030 Hb_001248_030 Hb_004410_150--Hb_001248_030 Hb_044724_010 Hb_044724_010 Hb_004410_150--Hb_044724_010 Hb_002524_030 Hb_002524_030 Hb_004410_150--Hb_002524_030 Hb_001529_050--Hb_001269_690 Hb_001104_240 Hb_001104_240 Hb_001529_050--Hb_001104_240 Hb_138585_110 Hb_138585_110 Hb_001529_050--Hb_138585_110 Hb_001529_050--Hb_003623_070 Hb_001529_050--Hb_000086_660 Hb_000086_660--Hb_001104_240 Hb_006586_030 Hb_006586_030 Hb_000086_660--Hb_006586_030 Hb_000086_660--Hb_001269_690 Hb_000086_660--Hb_000140_410 Hb_011930_070 Hb_011930_070 Hb_000086_660--Hb_011930_070 Hb_002827_020 Hb_002827_020 Hb_000086_660--Hb_002827_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.33871 4.18245 0.208594 0.774799 0.719206 0.296652
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.484821 0.436002 1.03938 4.32245 0.115895

CAGE analysis