Hb_001148_020

Information

Type -
Description -
Location Contig1148: 22084-23832
Sequence    

Annotation

kegg
ID rcu:RCOM_1292200
description Disease resistance protein RGA2, putative (EC:3.1.3.16)
nr
ID XP_012072750.1
description PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID A0A067KN28
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07835 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001148_020 0.0 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
2 Hb_121304_020 0.2516623342 - - -
3 Hb_184705_010 0.252002648 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
4 Hb_000017_150 0.26477027 - - hypothetical protein POPTR_0001s09780g [Populus trichocarpa]
5 Hb_001999_190 0.2656833119 - - GDP-mannose transporter, putative [Ricinus communis]
6 Hb_060237_020 0.2751314238 - - conserved hypothetical protein [Ricinus communis]
7 Hb_008864_040 0.2804986918 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15980 [Jatropha curcas]
8 Hb_003107_020 0.2834539608 - - hypothetical protein JCGZ_18656 [Jatropha curcas]
9 Hb_001491_060 0.2857938253 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6-like isoform X1 [Populus euphratica]
10 Hb_000373_190 0.2918348934 - - -
11 Hb_008983_060 0.301150967 desease resistance Gene Name: NB-ARC NB-ARC domain-containing disease resistance protein, putative [Theobroma cacao]
12 Hb_031527_070 0.3012045509 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
13 Hb_079733_010 0.3066974492 - - -
14 Hb_005504_020 0.3097284196 - - -
15 Hb_005679_100 0.3114291276 - - hypothetical protein POPTR_0013s15630g [Populus trichocarpa]
16 Hb_000826_060 0.312575612 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
17 Hb_179679_010 0.3177626146 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Fragaria vesca subsp. vesca]
18 Hb_003376_310 0.3185043781 - - hypothetical protein JCGZ_16500 [Jatropha curcas]
19 Hb_007157_060 0.3189830537 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
20 Hb_137914_010 0.3203350829 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]

Gene co-expression network

sample Hb_001148_020 Hb_001148_020 Hb_121304_020 Hb_121304_020 Hb_001148_020--Hb_121304_020 Hb_184705_010 Hb_184705_010 Hb_001148_020--Hb_184705_010 Hb_000017_150 Hb_000017_150 Hb_001148_020--Hb_000017_150 Hb_001999_190 Hb_001999_190 Hb_001148_020--Hb_001999_190 Hb_060237_020 Hb_060237_020 Hb_001148_020--Hb_060237_020 Hb_008864_040 Hb_008864_040 Hb_001148_020--Hb_008864_040 Hb_000624_020 Hb_000624_020 Hb_121304_020--Hb_000624_020 Hb_000663_030 Hb_000663_030 Hb_121304_020--Hb_000663_030 Hb_000347_090 Hb_000347_090 Hb_121304_020--Hb_000347_090 Hb_011903_010 Hb_011903_010 Hb_121304_020--Hb_011903_010 Hb_068347_010 Hb_068347_010 Hb_121304_020--Hb_068347_010 Hb_003384_070 Hb_003384_070 Hb_184705_010--Hb_003384_070 Hb_011382_050 Hb_011382_050 Hb_184705_010--Hb_011382_050 Hb_008983_060 Hb_008983_060 Hb_184705_010--Hb_008983_060 Hb_184705_010--Hb_000017_150 Hb_184705_010--Hb_001999_190 Hb_000315_030 Hb_000315_030 Hb_184705_010--Hb_000315_030 Hb_000017_150--Hb_011382_050 Hb_010398_010 Hb_010398_010 Hb_000017_150--Hb_010398_010 Hb_137914_010 Hb_137914_010 Hb_000017_150--Hb_137914_010 Hb_000017_150--Hb_003384_070 Hb_000152_460 Hb_000152_460 Hb_000017_150--Hb_000152_460 Hb_001103_040 Hb_001103_040 Hb_000017_150--Hb_001103_040 Hb_001999_190--Hb_008983_060 Hb_001491_060 Hb_001491_060 Hb_001999_190--Hb_001491_060 Hb_000107_320 Hb_000107_320 Hb_001999_190--Hb_000107_320 Hb_005975_020 Hb_005975_020 Hb_001999_190--Hb_005975_020 Hb_060237_020--Hb_008864_040 Hb_000390_100 Hb_000390_100 Hb_060237_020--Hb_000390_100 Hb_000215_100 Hb_000215_100 Hb_060237_020--Hb_000215_100 Hb_002173_020 Hb_002173_020 Hb_060237_020--Hb_002173_020 Hb_000627_180 Hb_000627_180 Hb_060237_020--Hb_000627_180 Hb_001055_030 Hb_001055_030 Hb_060237_020--Hb_001055_030 Hb_030827_060 Hb_030827_060 Hb_008864_040--Hb_030827_060 Hb_000086_580 Hb_000086_580 Hb_008864_040--Hb_000086_580 Hb_009028_030 Hb_009028_030 Hb_008864_040--Hb_009028_030 Hb_104265_030 Hb_104265_030 Hb_008864_040--Hb_104265_030 Hb_075449_020 Hb_075449_020 Hb_008864_040--Hb_075449_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.304814 0.287847 0.00902794 0.269205 0.190971 0.0100943
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0524369 0.0206283 0 0.156147 0

CAGE analysis