Hb_000347_090

Information

Type -
Description -
Location Contig347: 93922-96979
Sequence    

Annotation

kegg
ID vvi:100253210
description 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic-like
nr
ID XP_010654405.1
description PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic-like [Vitis vinifera]
swissprot
ID Q9C9P4
description 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic OS=Arabidopsis thaliana GN=KAS2 PE=1 SV=1
trembl
ID F6HXQ7
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g00790 PE=3 SV=1
Gene Ontology
ID GO:0016747
description 3-oxoacyl-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000347_090 0.0 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic-like [Vitis vinifera]
2 Hb_011903_010 0.0238587396 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_000663_030 0.2302147109 - - -
4 Hb_188411_010 0.2311820208 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 [Jatropha curcas]
5 Hb_068347_010 0.2407589744 - - -
6 Hb_161023_010 0.2590237775 - - PREDICTED: uncharacterized protein LOC105639929 [Jatropha curcas]
7 Hb_121304_020 0.2676209286 - - -
8 Hb_006502_100 0.2681739114 - - hypothetical protein POPTR_0003s01580g [Populus trichocarpa]
9 Hb_002843_090 0.2827152664 - - PREDICTED: CDPK-related kinase 4-like isoform X1 [Jatropha curcas]
10 Hb_099990_030 0.2839961132 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
11 Hb_014919_020 0.3066086931 - - -
12 Hb_000964_100 0.313279314 - - PREDICTED: uncharacterized protein LOC105628699 [Jatropha curcas]
13 Hb_000406_010 0.3136090151 - - PREDICTED: uncharacterized protein LOC105647846 [Jatropha curcas]
14 Hb_123560_030 0.3145102984 - - UDP-glucosyltransferase, putative [Ricinus communis]
15 Hb_019592_010 0.3210507207 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
16 Hb_007805_020 0.3281121964 - - -
17 Hb_144547_010 0.3284514411 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
18 Hb_061466_020 0.3297455053 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
19 Hb_000982_150 0.3346389198 transcription factor TF Family: Orphans histidine kinase 1 plant, putative [Ricinus communis]
20 Hb_000624_020 0.3400576727 transcription factor TF Family: NAC NAC transcription factor 004 [Jatropha curcas]

Gene co-expression network

sample Hb_000347_090 Hb_000347_090 Hb_011903_010 Hb_011903_010 Hb_000347_090--Hb_011903_010 Hb_000663_030 Hb_000663_030 Hb_000347_090--Hb_000663_030 Hb_188411_010 Hb_188411_010 Hb_000347_090--Hb_188411_010 Hb_068347_010 Hb_068347_010 Hb_000347_090--Hb_068347_010 Hb_161023_010 Hb_161023_010 Hb_000347_090--Hb_161023_010 Hb_121304_020 Hb_121304_020 Hb_000347_090--Hb_121304_020 Hb_011903_010--Hb_188411_010 Hb_011903_010--Hb_068347_010 Hb_011903_010--Hb_000663_030 Hb_006502_100 Hb_006502_100 Hb_011903_010--Hb_006502_100 Hb_011903_010--Hb_161023_010 Hb_000624_020 Hb_000624_020 Hb_000663_030--Hb_000624_020 Hb_000663_030--Hb_121304_020 Hb_122259_010 Hb_122259_010 Hb_000663_030--Hb_122259_010 Hb_144547_010 Hb_144547_010 Hb_000663_030--Hb_144547_010 Hb_188411_010--Hb_161023_010 Hb_000406_010 Hb_000406_010 Hb_188411_010--Hb_000406_010 Hb_160233_020 Hb_160233_020 Hb_188411_010--Hb_160233_020 Hb_133605_010 Hb_133605_010 Hb_188411_010--Hb_133605_010 Hb_014919_020 Hb_014919_020 Hb_188411_010--Hb_014919_020 Hb_002843_090 Hb_002843_090 Hb_068347_010--Hb_002843_090 Hb_007805_020 Hb_007805_020 Hb_068347_010--Hb_007805_020 Hb_020549_010 Hb_020549_010 Hb_068347_010--Hb_020549_010 Hb_000982_150 Hb_000982_150 Hb_068347_010--Hb_000982_150 Hb_161023_010--Hb_160233_020 Hb_001214_170 Hb_001214_170 Hb_161023_010--Hb_001214_170 Hb_161023_010--Hb_014919_020 Hb_061466_020 Hb_061466_020 Hb_161023_010--Hb_061466_020 Hb_167508_010 Hb_167508_010 Hb_161023_010--Hb_167508_010 Hb_121304_020--Hb_000624_020 Hb_001148_020 Hb_001148_020 Hb_121304_020--Hb_001148_020 Hb_121304_020--Hb_011903_010 Hb_121304_020--Hb_068347_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.113601 0.0232119 0.03472 0.0547314 0.0234021 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis