Hb_122259_010

Information

Type -
Description -
Location Contig122259: 241-781
Sequence    

Annotation

kegg
ID osa:4340048
description Os06g0137500
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_122259_010 0.0 - - -
2 Hb_000787_010 0.2579418646 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
3 Hb_047560_010 0.268334854 - - PREDICTED: GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase [Jatropha curcas]
4 Hb_004021_090 0.2686253145 - - hypothetical protein JCGZ_09233 [Jatropha curcas]
5 Hb_144547_010 0.2707837436 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
6 Hb_000663_030 0.273731252 - - -
7 Hb_066531_010 0.2740723963 - - ccd1, putative [Ricinus communis]
8 Hb_143933_010 0.2827033852 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
9 Hb_001277_190 0.2875087235 - - hypothetical protein CICLE_v10005534mg [Citrus clementina]
10 Hb_186589_010 0.2900638504 - - PREDICTED: developmentally-regulated G-protein 3 [Nelumbo nucifera]
11 Hb_158384_010 0.2984537725 - - poly(A) polymerase, putative [Ricinus communis]
12 Hb_025615_010 0.3078204124 - - hypothetical protein JCGZ_19555 [Jatropha curcas]
13 Hb_003768_060 0.3093916336 - - PREDICTED: transcription initiation factor IIB-like [Jatropha curcas]
14 Hb_005276_030 0.3119175275 - - PREDICTED: probable inactive patatin-like protein 9 [Jatropha curcas]
15 Hb_000197_170 0.3129022528 - - ATP binding protein, putative [Ricinus communis]
16 Hb_002235_180 0.3157747887 transcription factor TF Family: ERF PREDICTED: uncharacterized protein LOC105133481 [Populus euphratica]
17 Hb_095575_010 0.3193737132 - - hypothetical protein JCGZ_19529 [Jatropha curcas]
18 Hb_003531_040 0.3194223994 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
19 Hb_003544_040 0.3264318023 - - PREDICTED: protein TOO MANY MOUTHS [Jatropha curcas]
20 Hb_158349_010 0.3307490124 - - plastid CUL1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_122259_010 Hb_122259_010 Hb_000787_010 Hb_000787_010 Hb_122259_010--Hb_000787_010 Hb_047560_010 Hb_047560_010 Hb_122259_010--Hb_047560_010 Hb_004021_090 Hb_004021_090 Hb_122259_010--Hb_004021_090 Hb_144547_010 Hb_144547_010 Hb_122259_010--Hb_144547_010 Hb_000663_030 Hb_000663_030 Hb_122259_010--Hb_000663_030 Hb_066531_010 Hb_066531_010 Hb_122259_010--Hb_066531_010 Hb_099990_030 Hb_099990_030 Hb_000787_010--Hb_099990_030 Hb_000787_010--Hb_004021_090 Hb_003768_060 Hb_003768_060 Hb_000787_010--Hb_003768_060 Hb_028639_040 Hb_028639_040 Hb_000787_010--Hb_028639_040 Hb_000589_370 Hb_000589_370 Hb_000787_010--Hb_000589_370 Hb_002235_180 Hb_002235_180 Hb_000787_010--Hb_002235_180 Hb_047560_010--Hb_144547_010 Hb_005601_030 Hb_005601_030 Hb_047560_010--Hb_005601_030 Hb_143933_010 Hb_143933_010 Hb_047560_010--Hb_143933_010 Hb_130739_010 Hb_130739_010 Hb_047560_010--Hb_130739_010 Hb_001391_050 Hb_001391_050 Hb_047560_010--Hb_001391_050 Hb_000197_170 Hb_000197_170 Hb_047560_010--Hb_000197_170 Hb_009979_010 Hb_009979_010 Hb_004021_090--Hb_009979_010 Hb_001486_210 Hb_001486_210 Hb_004021_090--Hb_001486_210 Hb_004021_090--Hb_028639_040 Hb_183192_010 Hb_183192_010 Hb_004021_090--Hb_183192_010 Hb_115513_030 Hb_115513_030 Hb_004021_090--Hb_115513_030 Hb_000377_140 Hb_000377_140 Hb_144547_010--Hb_000377_140 Hb_009102_020 Hb_009102_020 Hb_144547_010--Hb_009102_020 Hb_000438_150 Hb_000438_150 Hb_144547_010--Hb_000438_150 Hb_144547_010--Hb_143933_010 Hb_144547_010--Hb_000197_170 Hb_000347_090 Hb_000347_090 Hb_000663_030--Hb_000347_090 Hb_011903_010 Hb_011903_010 Hb_000663_030--Hb_011903_010 Hb_000624_020 Hb_000624_020 Hb_000663_030--Hb_000624_020 Hb_121304_020 Hb_121304_020 Hb_000663_030--Hb_121304_020 Hb_000663_030--Hb_144547_010 Hb_025615_010 Hb_025615_010 Hb_066531_010--Hb_025615_010 Hb_000637_020 Hb_000637_020 Hb_066531_010--Hb_000637_020 Hb_000020_100 Hb_000020_100 Hb_066531_010--Hb_000020_100 Hb_001269_090 Hb_001269_090 Hb_066531_010--Hb_001269_090 Hb_004994_250 Hb_004994_250 Hb_066531_010--Hb_004994_250 Hb_000107_260 Hb_000107_260 Hb_066531_010--Hb_000107_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.31405 1.36597 1.26523 1.28415 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.153319 0 0.200489 0 0

CAGE analysis